PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g089045.1
Common NameMTR_3g089045
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 293aa    MW: 33310.2 Da    PI: 9.1953
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g089045.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.33.6e-181661147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     rg W + Ede+l ++v+q+G  +W++Ia++++ gR++k+c++rw++ 
  Medtr3g089045.1 16 RGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQ-GRSGKSCRLRWFNQ 61
                     899*****************************.***********996 PP
2Myb_DNA-binding60.53.5e-1968111146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r ++T+eE+e+l+ a++ +G++ W++Iar ++ gRt++ +k++w+ 
  Medtr3g089045.1  68 RRPFTEEEEERLLAAHRIHGNK-WALIARLFP-GRTDNAVKNHWHV 111
                      679*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.8411162IPR017930Myb domain
SuperFamilySSF466896.74E-3014109IPR009057Homeodomain-like
SMARTSM007178.4E-151564IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-271769IPR009057Homeodomain-like
PfamPF139212.0E-171979No hitNo description
CDDcd001674.76E-141960No hitNo description
PROSITE profilePS5129428.36663117IPR017930Myb domain
SMARTSM007172.4E-1667115IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.0E-2270116IPR009057Homeodomain-like
CDDcd001671.05E-779110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MDDSSSAAED TKSCPRGHWR PAEDEKLRQL VEQYGAQNWN SIAEKLQGRS GKSCRLRWFN  60
QLDPRINRRP FTEEEEERLL AAHRIHGNKW ALIARLFPGR TDNAVKNHWH VIMARKQREQ  120
SKLCGKRSFQ EVFSNSSILN FPYTTRIGYE NGRFYDNTPS SSLASWNFAS MSTKPNTTTA  180
STILPDNCIT RKGSNVYKGS DRSFLYRICP NQAFSSLPNY KRVAPNAFGF LNSSDDGRIK  240
KDLVSSLCDN SSTLITNLKS SMEKEQDRDE VEIEHHKEVP FIDFLGVGVS SS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-32161167107B-MYB
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.162670.0pod| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g089045.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU5323712e-50EU532371.1 Gossypium barbadense clone I17-9 ISSR marker genomic sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013461367.10.0transcription factor MYB54
TrEMBLA0A072V0T70.0A0A072V0T7_MEDTR; Myb transcription factor
STRINGXP_004502570.11e-138(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23034243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17950.13e-65myb domain protein 52
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]