PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g088485.1
Common NameMTR_3g088485
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WOX
Protein Properties Length: 164aa    MW: 19070.7 Da    PI: 10.9556
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g088485.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox46.75.3e-1581138557
                      SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox   5 ttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                       + +++   + eel+++ +r+p ae++++++++l    +++ ++V++WFqN++a+e++
  Medtr3g088485.1  81 LNNNNNSSATVEELYRRgTRTPYAEQIQQITAQLrkfgKIEGKNVFYWFQNHKARERQ 138
                      55667777889*****99**************************************97 PP
2Wus_type_Homeobox87.81.2e-28901401565
  Wus_type_Homeobox  15 iLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                          eely++G+rtP +e+iq+ita+L+++Gkie+kNVfyWFQN+kaRerqk+
    Medtr3g088485.1  90 TVEELYRRGTRTPYAEQIQQITAQLRKFGKIEGKNVFYWFQNHKARERQKR 140
                        579**********************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500719.96174139IPR001356Homeobox domain
SuperFamilySSF466895.26E-876146IPR009057Homeodomain-like
PfamPF000461.1E-1280138IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.6E-483143IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 164 aa     Download sequence    Send to blast
MWMVGYNEGG EFNMADYPFC GRKLRPLMPR PVLVPTTSPN NTSTITPSLN RIHGGNDLFS  60
QYHHNLRQQA SVGDHSKRSE LNNNNNSSAT VEELYRRGTR TPYAEQIQQI TAQLRKFGKI  120
EGKNVFYWFQ NHKARERQKR RRQMFLVKMG FWRVLFSVGF GEK*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Specifically expressed during initiation of the shoot apical meristem, when cotyledonary primordia arise at the flanks of the apical embryo domain phase. Confined to the initiating vascular primordium of the cotyledons during heart and torpedo stages, but only weakly expressed during bent cotyledon stage. {ECO:0000269|PubMed:14711878}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g088485.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1418641e-147AC141864.7 Medicago truncatula clone mth2-21o24, complete sequence.
GenBankAC1743001e-147AC174300.4 Medicago truncatula clone mth2-84c16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013461296.11e-121WUSCHEL-related homeobox 1
SwissprotQ6X7K02e-34WOX1_ARATH; WUSCHEL-related homeobox 1
TrEMBLA0A072V0W61e-119A0A072V0W6_MEDTR; Putative transcription factor Homobox-WOX family
STRINGAET049171e-110(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28923471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.13e-28WUSCHEL related homeobox 1
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]