PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g087940.1
Common NameMTR_3g087940
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bZIP
Protein Properties Length: 364aa    MW: 41304.9 Da    PI: 6.7997
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g087940.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_137.64.9e-1278116442
                      XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeN 42 
                      +k +rr+++NReAAr+sR+RKka++++Le    +L +  
  Medtr3g087940.1  78 DKIQRRLAQNREAARKSRLRKKAYVQQLESSRLKLVQLE 116
                      6889*************************8655555444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003385.9E-675135IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.85277121IPR004827Basic-leucine zipper domain
CDDcd147087.59E-2179131No hitNo description
PfamPF001701.1E-879117IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.5E-779119No hitNo description
Gene3DG3DSA:1.20.5.1701.1E-780121No hitNo description
PROSITE patternPS0003608297IPR004827Basic-leucine zipper domain
PfamPF141443.9E-32165239IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042742Biological Processdefense response to bacterium
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MNSPSAQFVS SRRMSVYDPI HQINMWGEGF KSNGNLSASI PLIDEADLKF DSSQSEDASH  60
GMLGTSNKYE QEANRPIDKI QRRLAQNREA ARKSRLRKKA YVQQLESSRL KLVQLEQELE  120
RVRQQGMYMG GGLDSNNMCF AGPVNPGIAA FEMEYGHWVD EQNRQISEMR NALNSHISDI  180
ELRMLVDGMM NHYAEIYRMK SAAAKTDVFY VMSGMWKTTA ERFFLWIGGF RPSELLKILG  240
PMIEPLTEQQ RLDIDNLGQS CQQAEDALSQ GMEKLRQTLA DSVAAGQFIE GTYIPQMATA  300
MEKLEALVSF VNQADHLRQE TLQQMSRTLT IRQSARCLLA LGEYFQRLRA LSSLWSNRPR  360
EPA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.161350.0root| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Predominantly expressed in roots. {ECO:0000269|PubMed:8628224}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-TGACG-3'. Recognizes ocs elements like the as-1 motif of the cauliflower mosaic virus 35S promoter. Binding to the as-1-like cis elements mediate auxin- and salicylic acid-inducible transcription. May be involved in the induction of the systemic acquired resistance (SAR) via its interaction with NPR1. Could also bind to the Hex-motif (5'-TGACGTGG-3') another cis-acting element found in plant histone promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00586DAPTransfer from AT5G65210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g087940.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003602022.10.0transcription factor TGA1 isoform X1
RefseqXP_024634131.10.0transcription factor TGA1 isoform X1
SwissprotQ392370.0TGA1_ARATH; Transcription factor TGA1
TrEMBLG7J4F00.0G7J4F0_MEDTR; BZIP family transcription factor
STRINGAES722730.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF109634104
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65210.51e-173bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Herrera-Vásquez A, et al.
    Transcriptional Control of Glutaredoxin GRXC9 Expression by a Salicylic Acid-Dependent and NPR1-Independent Pathway in Arabidopsis.
    Plant Mol. Biol. Rep., 2018.
    [PMID:26696694]
  5. Gutsche N,Zachgo S
    The N-Terminus of the Floral Arabidopsis TGA Transcription Factor PERIANTHIA Mediates Redox-Sensitive DNA-Binding.
    PLoS ONE, 2016. 11(4): p. e0153810
    [PMID:27128442]
  6. Sun T, et al.
    TGACG-BINDING FACTOR 1 (TGA1) and TGA4 regulate salicylic acid and pipecolic acid biosynthesis by modulating the expression of SYSTEMIC ACQUIRED RESISTANCE DEFICIENT 1 (SARD1) and CALMODULIN-BINDING PROTEIN 60g (CBP60g).
    New Phytol., 2018. 217(1): p. 344-354
    [PMID:28898429]