PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g087530.1
Common NameMTR_3g087530
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family EIL
Protein Properties Length: 429aa    MW: 48941.1 Da    PI: 4.9865
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g087530.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3385.39.1e-118323031278
                      XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
             EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLraW 94 
                      eelkkrmwkd++ll++lke++++++   e+     +++  +e++rrkkmsraQD++LkYM k+m vc+a+GfvYgiipekgkpv+g+sdsLr+W
  Medtr3g087530.1  32 EELKKRMWKDKILLQKLKEKQENNT---EP-----EQQAKQEASRRKKMSRAQDSVLKYMAKIMDVCKAKGFVYGIIPEKGKPVSGSSDSLREW 117
                      8*********************976...44.....233558***************************************************** PP

                      XXXXXXXXXXXXXXXXXX...XXXXXXXXXXXXX......XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--HHHHH CS
             EIN3  95 Wkekvefdrngpaaisky...qaknlilsgessl..qtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkelwwge 183
                      Wk++++fd+ +p a++ky          ++e+ +   ++++s+ h l++lqD+tlgSLLsalmqhc ppqrrfple+g++pPWWPtG+e wwge
  Medtr3g087530.1 118 WKDQIRFDQSAPLAVAKYlplL-----REDEHFNtiMADPNSYIHLLQDLQDSTLGSLLSALMQHCVPPQRRFPLERGISPPWWPTGSENWWGE 206
                      ******************4441.....33322221245799***************************************************** PP

                      HT.--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXXXX.XXXXXXXXXX CS
             EIN3 184 lg.lskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsahss.slrkqspkvt 275
                      +g l+++qg+ppykkphdlkkawkvsvL+ vikhmsp++e++r+l+ qsk lqdkm+a++s+++++v+nqee+++       + +++++ ++  
  Medtr3g087530.1 207 QGlLAQEQGPPPYKKPHDLKKAWKVSVLAGVIKHMSPDLEKLRKLVTQSKTLQDKMTARDSATWSKVMNQEEALLGVTDKCHKlTISEEGESSG 300
                      **999*******************************************************************9874322222222222222222 PP

                      XXX CS
             EIN3 276 lsc 278
                       s+
  Medtr3g087530.1 301 GSS 303
                      222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048733.4E-11632278No hitNo description
Gene3DG3DSA:1.10.3180.104.0E-67154281IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167686.15E-59156280IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MVVISEEIDP YGAEAEGTEE VTETETESVD YEELKKRMWK DKILLQKLKE KQENNTEPEQ  60
QAKQEASRRK KMSRAQDSVL KYMAKIMDVC KAKGFVYGII PEKGKPVSGS SDSLREWWKD  120
QIRFDQSAPL AVAKYLPLLR EDEHFNTIMA DPNSYIHLLQ DLQDSTLGSL LSALMQHCVP  180
PQRRFPLERG ISPPWWPTGS ENWWGEQGLL AQEQGPPPYK KPHDLKKAWK VSVLAGVIKH  240
MSPDLEKLRK LVTQSKTLQD KMTARDSATW SKVMNQEEAL LGVTDKCHKL TISEEGESSG  300
GSSSSSSNNR SEKRKFVFDV GGDDVEGPQS KLPMAMSLTH RVPKLLDCDA RIENVDDWLK  360
MGEIEGGKFG WDVEHWLNDV DDHEFEAALE MVKGNNNMDF TQNQEHNLHG QEEEKSIWDF  420
RYQYPSQD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A7e-601542801126Protein ETHYLENE INSENSITIVE 3
4zds_B7e-601542801126Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g087530.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1253890.0AC125389.33 Medicago truncatula clone mth2-12a18, complete sequence.
GenBankCR9403090.0CR940309.6 M.truncatula DNA sequence from clone MTH2-10C20 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003601983.10.0ETHYLENE INSENSITIVE 3-like 5 protein
SwissprotQ9FJQ51e-120EIL5_ARATH; ETHYLENE INSENSITIVE 3-like 5 protein
TrEMBLG7J4B10.0G7J4B1_MEDTR; Ethylene insensitive protein
STRINGAES722340.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32234200
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65100.11e-114EIL family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]