PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr3g075140.1 | ||||||||
Common Name | MTR_3g075140 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | B3 | ||||||||
Protein Properties | Length: 251aa MW: 28747.6 Da PI: 7.3689 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 42.1 | 1.6e-13 | 76 | 137 | 34 | 99 |
SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 34 ktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +++ led++g++W +++ + +g++ ++kGW +F +a++L+ gD +vF +++ +f vk++++ Medtr3g075140.1 76 QKINLEDSTGKRWAITV--SEVDGSFAFKKGWDDFSSAHKLEIGDLLVFNCINKYNF--DVKIYDQ 137 58***************..*******************************8876666..8888776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 11.801 | 45 | 138 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 4.2E-16 | 56 | 140 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 7.46E-16 | 58 | 140 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.86E-10 | 75 | 136 | No hit | No description |
Pfam | PF02362 | 1.9E-10 | 75 | 136 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MYDISTFLYS TCEAILNILC PKIRKGYIQH FLHPRVFLFI LLPFRAPREN KNSAMVRNQQ 60 DLPSKLNPTM SLLVDQKINL EDSTGKRWAI TVSEVDGSFA FKKGWDDFSS AHKLEIGDLL 120 VFNCINKYNF DVKIYDQSMC ERIDFSDKRK RKKRSRCSSG SLDAGGTPNS VEVVSENVNV 180 DRSVKCPRTS EDTSYIRNHV YLNDAAIFNN DPMFEEVLGS GDTSYASKFG LLDRKDFFWS 240 QVQDSQVTES L |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 147 | 153 | KRKRKKR |
2 | 148 | 152 | RKRKK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr3g075140.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024635817.1 | 1e-154 | B3 domain-containing protein Os01g0905400 isoform X1 | ||||
Refseq | XP_024635818.1 | 1e-154 | B3 domain-containing protein Os01g0905400 isoform X2 | ||||
TrEMBL | A0A072V0U1 | 0.0 | A0A072V0U1_MEDTR; B3 DNA-binding domain protein (Fragment) | ||||
STRING | XP_004501829.1 | 1e-50 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF12476 | 28 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G33280.1 | 6e-08 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr3g075140.1 |
Entrez Gene | 25489504 |
Publications ? help Back to Top | |||
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