PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g073420.1
Common NameMTR_3g073420
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ARF
Protein Properties Length: 594aa    MW: 64873.3 Da    PI: 6.5797
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g073420.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.51.5e-24117218199
                      EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                      f k+ltpsd+++ g +++p+ +a+++      +++++ +  l ++d +g +We+++iyr++++r++lt+GW++Fv+a++L +gD+vvF+  +++
  Medtr3g073420.1 117 FAKILTPSDANNGGGFSVPRFCADSIfppldySMDPPLQ-NLLITDVHGLTWEFRHIYRGTPRRHLLTTGWSKFVNAKKLVAGDSVVFM--KNT 207
                      89*********************999******5566654.7999*********************************************..678 PP

                      EE..EEEEE-S CS
               B3  89 efelvvkvfrk 99 
                      ++ ++++++r+
  Medtr3g073420.1 208 RGAMFIGIRRA 218
                      9999***9986 PP
2Auxin_resp91.91.1e-30276358182
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsL 82 
                      aa+ a++++ FevvY+Pra++s+Fv k+e v +a++v +++GmR+kma+et+dss++++ +G+v+ vs  d   W++S+Wr+L
  Medtr3g073420.1 276 AAEMAAQGMGFEVVYYPRAGWSDFVLKAEVVDAAMSVTWCPGMRIKMAVETDDSSRTTWfQGVVSQVSVPDHGAWRGSPWRML 358
                      688999****************************************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.9E-33113220IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.83E-29113225IPR015300DNA-binding pseudobarrel domain
CDDcd100172.93E-20116217No hitNo description
PfamPF023628.6E-23117218IPR003340B3 DNA binding domain
SMARTSM010193.7E-19117219IPR003340B3 DNA binding domain
PROSITE profilePS5086312.661117219IPR003340B3 DNA binding domain
PfamPF065071.1E-27276358IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0010208Biological Processpollen wall assembly
GO:0048830Biological Processadventitious root development
GO:0052543Biological Processcallose deposition in cell wall
GO:0005634Cellular Componentnucleus
GO:0000987Molecular Functioncore promoter proximal region sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 594 aa     Download sequence    Send to blast
MNRQVLPPSP KNASSLNPKL WRAIAGAAVQ IPTVNSRVYY FPQGHMDQAT SLPNNLSPLL  60
LSRPYILCSV SAVHFLADPK TDEVFAKLFL QPLNDFTVNF PRIPVIEADD GERISSFAKI  120
LTPSDANNGG GFSVPRFCAD SIFPPLDYSM DPPLQNLLIT DVHGLTWEFR HIYRGTPRRH  180
LLTTGWSKFV NAKKLVAGDS VVFMKNTRGA MFIGIRRAVR FVPNRTSSGV CSDVSRLCLP  240
ICGVRSRVDD EEKLVEEKAF SRHGKGKLSP VAVAEAAEMA AQGMGFEVVY YPRAGWSDFV  300
LKAEVVDAAM SVTWCPGMRI KMAVETDDSS RTTWFQGVVS QVSVPDHGAW RGSPWRMLHI  360
TWDEPEVLQT SKWVSPWQVE LLSTTPSLHT PFPPLKRTRG VSGVLTDGDG DPFSITGFTN  420
STTGQLNQPL LSYSTFPAGM QGARHDLFSV SSFSNFPGDN FRLCMGNSFG SNTVPGLKSF  480
STDLNVGSSQ SGDFSPESQS SLPSFGTDFV RNYNCNSMKP GPITFQLFGA VIQTEQPVES  540
GSHGTVSTGD DSSKGCNETE GINNPLEDST YSKLLDRLDG QCQIASTVEA CYL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A8e-681338416357Auxin response factor 1
4ldy_B8e-681338416357Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g073420.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003601137.10.0auxin response factor 17
SwissprotQ84WU61e-165ARFQ_ARATH; Auxin response factor 17
TrEMBLG7J4630.0G7J463_MEDTR; Auxin response factor
STRINGAES713880.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40303056
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77850.11e-162auxin response factor 17
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Shi ZH, et al.
    Overexpression of AtTTP affects ARF17 expression and leads to male sterility in Arabidopsis.
    PLoS ONE, 2015. 10(3): p. e0117317
    [PMID:25822980]
  3. de Lucas M, et al.
    Transcriptional Regulation of Arabidopsis Polycomb Repressive Complex 2 Coordinates Cell-Type Proliferation and Differentiation.
    Plant Cell, 2016. 28(10): p. 2616-2631
    [PMID:27650334]
  4. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  5. Wang B, et al.
    Fine regulation of ARF17 for anther development and pollen formation.
    BMC Plant Biol., 2017. 17(1): p. 243
    [PMID:29258431]
  6. Wójcik AM,Nodine MD,Gaj MD
    miR160 and miR166/165 Contribute to the LEC2-Mediated Auxin Response Involved in the Somatic Embryogenesis Induction in Arabidopsis.
    Front Plant Sci, 2017. 8: p. 2024
    [PMID:29321785]
  7. Lin JS, et al.
    MicroRNA160 Modulates Plant Development and Heat Shock Protein Gene Expression to Mediate Heat Tolerance in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 68
    [PMID:29449855]