PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g070030.1
Common NameMTR_3g070030
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NAC
Protein Properties Length: 353aa    MW: 40119.8 Da    PI: 7.1804
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g070030.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM176.47.9e-55201442128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 
                      p+GfrF Ptdeel+++yL kkv+++++ +  +i+evd++k+ePwdLp+++k +e++wyfF+ r++ky+tg+r+nrat++gyWkatgkdke+++ 
  Medtr3g070030.1  20 PVGFRFYPTDEELINHYLIKKVDDNSFCA-IAIAEVDMNKCEPWDLPEMAKMGETKWYFFCVRERKYPTGRRTNRATNAGYWKATGKDKEIFK- 111
                      89************************988.78***************9889999***************************************. PP

              NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +++l+g+kktLvfy grap+gekt+Wvmheyrl
  Medtr3g070030.1 112 GNALIGMKKTLVFYIGRAPSGEKTNWVMHEYRL 144
                      999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-6115170IPR003441NAC domain
PROSITE profilePS5100555.78619170IPR003441NAC domain
PfamPF023651.1E-2820144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MRSDENVSNH KMENEKIKFP VGFRFYPTDE ELINHYLIKK VDDNSFCAIA IAEVDMNKCE  60
PWDLPEMAKM GETKWYFFCV RERKYPTGRR TNRATNAGYW KATGKDKEIF KGNALIGMKK  120
TLVFYIGRAP SGEKTNWVMH EYRLKGNTLS EHNPSTNGMS EWVLSRVFEK KNCAKKKDVS  180
KHGRFNSSRE GPSNTNESLL PQLLDSSPYN SENQTTLSDF SQNKVKPKSQ DDNIVHNNET  240
SILNISSSSK QMDVYPLAEV IAADLNQTSM VGNSSNFFFS QDQSLLRMQL ENENIGTTSN  300
QSINQEFSFG RYSDDDISSV VYGNGMLQRW FGNQELSSAS TGHVVNDSLK NF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-531617614171NO APICAL MERISTEM PROTEIN
1ut4_B5e-531617614171NO APICAL MERISTEM PROTEIN
1ut7_A5e-531617614171NO APICAL MERISTEM PROTEIN
1ut7_B5e-531617614171NO APICAL MERISTEM PROTEIN
4dul_A5e-531617614171NAC domain-containing protein 19
4dul_B5e-531617614171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.203090.0glandular trichome
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g070030.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT9610560.0CT961056.6 M.truncatula DNA sequence from clone MTH2-16N8 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003600845.20.0NAC domain-containing protein 100
TrEMBLG7JAN20.0G7JAN2_MEDTR; ANAC079/ANAC080/ATNAC4 protein
STRINGAES710960.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40934171
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61430.11e-95NAC domain containing protein 100
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]