PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g065100.1
Common NameMTR_3g065100
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family M-type_MADS
Protein Properties Length: 243aa    MW: 27866.3 Da    PI: 10.4007
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g065100.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF54.41.7e-171050242
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                     +i n+s r+ tf kR++g++KK +ELS+LC+++++ ii+s+
  Medtr3g065100.1 10 FIINDSARKATFKKRKKGLMKKVSELSTLCGIDACAIIYSP 50
                     789*************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006616.61149IPR002100Transcription factor, MADS-box
SMARTSM004322.2E-24160IPR002100Transcription factor, MADS-box
CDDcd002661.91E-24285No hitNo description
SuperFamilySSF554553.92E-25295IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-7323IPR002100Transcription factor, MADS-box
PfamPF003193.1E-181051IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-72338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MTRKKVKLAF IINDSARKAT FKKRKKGLMK KVSELSTLCG IDACAIIYSP YDPQPEVWPS  60
PLGVQRVLSK FRKMPELEQS KKMVNQESFL RQRIQKAKDQ LTKQRKDNRE KEMTQLMFQY  120
LSADQVMHNI SMVDLNDMAW LIDQYLKDIN RRVEMLSRNG QGQGQTQTQT QMVASTMVAN  180
PVPKIEENGQ GSHGQHVLDM NMDVMQKQHF FMNLMNNGGG DQAPPMGNVN PPNGFWPNPF  240
FR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAFIINDSARKATFKKRK
22125KKRKK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in the central cell of the female gametophyte and in early endosperm. Also detected in ovaries, young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269|PubMed:16798889}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00553DAPTransfer from AT5G48670Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g065100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1488180.0AC148818.15 Medicago truncatula clone mth2-39c7, complete sequence.
GenBankCT0095350.0CT009535.6 M.truncatula DNA sequence from clone MTH2-68D12 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024635654.10.0agamous-like MADS-box protein AGL80
SwissprotQ9FJK39e-69AGL80_ARATH; Agamous-like MADS-box protein AGL80
TrEMBLG7J8R00.0G7J8R0_MEDTR; MADS-box transcription factor family protein
STRINGAES709370.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45233154
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.11e-69AGAMOUS-like 80
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]