PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr3g064840.1 | ||||||||
Common Name | MTR_3g064840 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | G2-like | ||||||||
Protein Properties | Length: 463aa MW: 50862.1 Da PI: 7.7019 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.7 | 4.6e-32 | 275 | 328 | 2 | 55 |
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 pr+rWt++LH+rFv+ave LGG+e+AtPk++lelm+vk+Ltl+hvkSHLQ+YR+ Medtr3g064840.1 275 PRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRT 328 9****************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.69E-15 | 272 | 328 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.9E-28 | 273 | 328 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.2E-23 | 275 | 328 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 8.6E-7 | 276 | 327 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009887 | Biological Process | organ morphogenesis | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0009956 | Biological Process | radial pattern formation | ||||
GO:0010051 | Biological Process | xylem and phloem pattern formation | ||||
GO:0010158 | Biological Process | abaxial cell fate specification | ||||
GO:0010229 | Biological Process | inflorescence development | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 463 aa Download sequence Send to blast |
MPLEGIFIEP ISTSTTPPDL SLQISPPSTS NSSLICNNTT QTSNYEPHNS SRTTLAQAQA 60 HTELSLGRNF SVSGGAQEQP QQHQQPHNPY YQNQQAHFPH FQHHNSTTTT TSTTTNSSSH 120 MNHINYGVSL LDVSSTSSEG LRPIKGIPVY HNRSFPFLPA MEHSREKDPK MCLYHHMPNS 180 TPSPSSSSSP LSPYIAAGGL DPMSFLNSSG SAAAYRAAVA TRFNNEPFKS HQYPLHHHHH 240 HHSHYGSVGL GSSEASMMRS RFLPKLPTKR SMRAPRMRWT STLHARFVHA VELLGGHERA 300 TPKSVLELMD VKDLTLAHVK SHLQMYRTVK TTDKPAASSG LSDGSGEDDV PQIGSNGGIR 360 QFSDQRGLTD RPIQQDMDYS STNTLWSNSS SSREPWPQTS PNDIDGFRPT IFQSQPISGG 420 HQIQECDSNQ LKNNLSGSNL ECKNPSLEFT LGIPDWNGKG QA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-16 | 276 | 330 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-16 | 276 | 330 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-16 | 276 | 330 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-16 | 276 | 330 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-16 | 276 | 330 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-16 | 276 | 330 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-16 | 276 | 330 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-16 | 276 | 330 | 4 | 58 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr3g064840.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC147472 | 0.0 | AC147472.18 Medicago truncatula clone mth2-24n18, complete sequence. | |||
GenBank | CR940306 | 0.0 | CR940306.3 M.truncatula DNA sequence from clone MTH2-10B11 on chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003600664.2 | 0.0 | transcription repressor KAN1 isoform X1 | ||||
TrEMBL | G7J8N8 | 0.0 | G7J8N8_MEDTR; Putative transcription factor MYB-HB-like family | ||||
STRING | AES70915 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1756 | 33 | 91 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G16560.1 | 5e-64 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr3g064840.1 |
Entrez Gene | 11406110 |
Publications ? help Back to Top | |||
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