PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr3g056100.2 | ||||||||
Common Name | MTR_3g056100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | WRKY | ||||||||
Protein Properties | Length: 583aa MW: 63403.9 Da PI: 6.9282 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.9 | 6.4e-31 | 243 | 300 | 2 | 60 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 dDgynWrKYGqK vkg efprsYY+Ct+++C+vkk ers+ d++++ei+Y+g+H+h+k Medtr3g056100.2 243 DDGYNWRKYGQKLVKGCEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIVYKGTHDHPK 300 8****************************************.***************85 PP | |||||||
2 | WRKY | 106.2 | 1.7e-33 | 401 | 459 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+ Medtr3g056100.2 401 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 459 59********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 23.342 | 237 | 301 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.4E-26 | 238 | 301 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.96E-24 | 240 | 301 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.5E-33 | 242 | 300 | IPR003657 | WRKY domain |
Pfam | PF03106 | 5.6E-24 | 243 | 299 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 1.3E-37 | 386 | 461 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 2.35E-29 | 393 | 461 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 38.825 | 396 | 461 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.1E-39 | 401 | 460 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.5E-26 | 402 | 459 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009961 | Biological Process | response to 1-aminocyclopropane-1-carboxylic acid | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 583 aa Download sequence Send to blast |
MDAAGDTQFR RQTPAGEMEH HSEDPNRTGS SSRPDSFSDG PTTSGARYKL MSPAKLPISR 60 SPVLTIPPGL SPTSFLESPV LLSNMKVEPS PTTGSLPRLQ QTVHGFVTSS TSAAFPVTSA 120 CFNSNSVDDG KSSFFEFKPH SRSNMVPADF YNHACEQSTQ IDGQGNVKSF VSSALVKSET 180 AVPSDEISLS SSPVQMISSG ASAHVEVDLD ESNPSGSKAT GLQVSQVDGR GNGLSVAADK 240 ASDDGYNWRK YGQKLVKGCE FPRSYYKCTH PNCEVKKLFE RSHDGQITEI VYKGTHDHPK 300 PQPSRRFSGG NMMSVQEERS DRASLTSRDA ERDSTPELSP IAANDGSPEG AGFLSNQNND 360 EVDEDDPFSK RRKMDLDITP VVKPIREPRV VVQTLSEVDI LDDGYRWRKY GQKVVRGNPN 420 PRSYYKCTNA GCPVRKHVER ASHDPKAVIT TYEGKHNHDV PTARHNSHDM AGPSAAGGQT 480 RIRHEESDTI SLDLGMGLSP TAENRPNSLG RMMRNEYGDS QTHNGNSSFK FVHSSTPPPV 540 YFGVLNNSAN PYGSRENPSD SSSLNRSAYP CPQNMGRIIM GP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 8e-37 | 243 | 461 | 8 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 8e-37 | 243 | 461 | 8 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.20616 | 0.0 | glandular trichome| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00455 | DAP | Transfer from AT4G26640 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr3g056100.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT961058 | 0.0 | CT961058.16 M.truncatula DNA sequence from clone MTH2-80N17 on chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003600260.2 | 0.0 | probable WRKY transcription factor 20 isoform X2 | ||||
Swissprot | Q93WV0 | 0.0 | WRK20_ARATH; Probable WRKY transcription factor 20 | ||||
TrEMBL | G7J210 | 0.0 | G7J210_MEDTR; WRKY family transcription factor | ||||
STRING | AES70510 | 0.0 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G26640.2 | 0.0 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr3g056100.2 |
Entrez Gene | 11430897 |
Publications ? help Back to Top | |||
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