PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g056100.1
Common NameMTR_3g056100
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 596aa    MW: 64912.5 Da    PI: 6.8566
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g056100.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.96.6e-31243300260
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                      dDgynWrKYGqK vkg efprsYY+Ct+++C+vkk  ers+ d++++ei+Y+g+H+h+k
  Medtr3g056100.1 243 DDGYNWRKYGQKLVKGCEFPRSYYKCTHPNCEVKKLFERSH-DGQITEIVYKGTHDHPK 300
                      8****************************************.***************85 PP
2WRKY106.21.7e-33414472159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+v+g+++prsYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  Medtr3g056100.1 414 LDDGYRWRKYGQKVVRGNPNPRSYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 472
                      59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081123.342237301IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.5E-26238301IPR003657WRKY domain
SuperFamilySSF1182902.09E-24240301IPR003657WRKY domain
SMARTSM007744.5E-33242300IPR003657WRKY domain
PfamPF031065.7E-24243299IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.3E-37399474IPR003657WRKY domain
SuperFamilySSF1182902.35E-29406474IPR003657WRKY domain
PROSITE profilePS5081138.825409474IPR003657WRKY domain
SMARTSM007743.1E-39414473IPR003657WRKY domain
PfamPF031063.6E-26415472IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009611Biological Processresponse to wounding
GO:0009961Biological Processresponse to 1-aminocyclopropane-1-carboxylic acid
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
MDAAGDTQFR RQTPAGEMEH HSEDPNRTGS SSRPDSFSDG PTTSGARYKL MSPAKLPISR  60
SPVLTIPPGL SPTSFLESPV LLSNMKVEPS PTTGSLPRLQ QTVHGFVTSS TSAAFPVTSA  120
CFNSNSVDDG KSSFFEFKPH SRSNMVPADF YNHACEQSTQ IDGQGNVKSF VSSALVKSET  180
AVPSDEISLS SSPVQMISSG ASAHVEVDLD ESNPSGSKAT GLQVSQVDGR GNGLSVAADK  240
ASDDGYNWRK YGQKLVKGCE FPRSYYKCTH PNCEVKKLFE RSHDGQITEI VYKGTHDHPK  300
PQPSRRFSGG NMMSVQEERS DRASLTSRDD KDFNNYGQMS HAAERDSTPE LSPIAANDGS  360
PEGAGFLSNQ NNDEVDEDDP FSKRRKMDLD ITPVVKPIRE PRVVVQTLSE VDILDDGYRW  420
RKYGQKVVRG NPNPRSYYKC TNAGCPVRKH VERASHDPKA VITTYEGKHN HDVPTARHNS  480
HDMAGPSAAG GQTRIRHEES DTISLDLGMG LSPTAENRPN SLGRMMRNEY GDSQTHNGNS  540
SFKFVHSSTP PPVYFGVLNN SANPYGSREN PSDSSSLNRS AYPCPQNMGR IIMGP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A9e-37243474877Probable WRKY transcription factor 4
2lex_A9e-37243474877Probable WRKY transcription factor 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.206160.0glandular trichome| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00455DAPTransfer from AT4G26640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g056100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT9610580.0CT961058.16 M.truncatula DNA sequence from clone MTH2-80N17 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003600259.10.0probable WRKY transcription factor 20 isoform X1
SwissprotQ93WV00.0WRK20_ARATH; Probable WRKY transcription factor 20
TrEMBLG7J2090.0G7J209_MEDTR; Putative transcription factor WRKY family
STRINGAES705100.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39463463
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.20.0WRKY family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]