PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g045830.1
Common NameMTR_3g045830
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family HB-other
Protein Properties Length: 508aa    MW: 57499.8 Da    PI: 6.5141
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g045830.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.52.2e-182075257
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
         Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                     +kR   t+ ql +Le+++++++yp++e++ eLA++l Lte+q++ WF+ rR k+k+
  Medtr3g045830.1 20 SKRKLKTPAQLMALENFYNEHKYPTEEMKVELANELALTEKQISGWFCHRRLKDKR 75
                     589999************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.7E-20675IPR009057Homeodomain-like
SuperFamilySSF466895.13E-171578IPR009057Homeodomain-like
PROSITE profilePS5007116.391676IPR001356Homeobox domain
SMARTSM003894.2E-181880IPR001356Homeobox domain
CDDcd000863.94E-162175No hitNo description
PfamPF000467.5E-162175IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MEEPMELQLE DNTTSTEKNS KRKLKTPAQL MALENFYNEH KYPTEEMKVE LANELALTEK  60
QISGWFCHRR LKDKRLMKGE VCANGRQDQS SGVVQDRVSG LRQDSCGSTK HGEYRCLDPK  120
EVESHGLYNH EVLVADMKYV LRNHCTENDS ETDNSSPESS SSLQERYYLQ GQDPYDMELS  180
RHATPNGALP PLNPTGYKPS GYLKVKKEIE HAAITAVKNR LGRHFLEDGP LLNVDFDTIP  240
PGAFEFQTAN PVNETYHVAN PSLSNSPEDC APNRQSCLNS SIDLYMNKLS SQDFQDKKSH  300
QLIQQRTNFQ GRPIHTNHLP GKNFPVDLNV DSTGEAPSYN GTRNHRIGTK HGVERMRSDS  360
ASNPNRYHEN NLVIMKSDPL LHGYNNGNVK NVQRSGYIKS EPSNAMHNSR ISMDSEERGL  420
SEWMAKEEKF NGTRKIKKEY HESDGVRMPS REIVVAKRAK FDLLHQYDIK QEPAAEIEPR  480
KTQRSAVELP SSFSEDDETA ETSSSLG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g045830.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013459518.10.0homeobox-DDT domain protein RLT1
TrEMBLA0A072UUN90.0A0A072UUN9_MEDTR; Homeobox leucine zipper protein
STRINGXP_004513413.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF57923051
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G03250.14e-70HB-other family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]