PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g039990.1
Common NameMTR_3g039990
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 312aa    MW: 35477 Da    PI: 5.2806
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g039990.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.99.5e-181562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +lv +++++G+g+W++++ t g+ R+ k+c++rw +yl
  Medtr3g039990.1 15 KGPWTPEEDIILVSYIQEHGPGNWRSVPTTTGLMRCSKSCRLRWTNYL 62
                     79********************************************97 PP
2Myb_DNA-binding44.34e-1468113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++   E++ ++++ ++lG++ W++Ia++++  Rt++++k++w+++l
  Medtr3g039990.1  68 RGNFNDHEEKMIIHLQALLGNR-WAAIASYLP-ERTDNDIKNYWNTHL 113
                      899*******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.4E-23664IPR009057Homeodomain-like
PROSITE profilePS5129424.7021066IPR017930Myb domain
SuperFamilySSF466891.91E-2912109IPR009057Homeodomain-like
SMARTSM007175.8E-121464IPR001005SANT/Myb domain
PfamPF002492.1E-151562IPR001005SANT/Myb domain
CDDcd001671.01E-91762No hitNo description
Gene3DG3DSA:1.10.10.602.5E-2365118IPR009057Homeodomain-like
SMARTSM007171.1E-1467115IPR001005SANT/Myb domain
PROSITE profilePS5129418.08467117IPR017930Myb domain
PfamPF002491.6E-1268113IPR001005SANT/Myb domain
CDDcd001677.62E-1070113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MMVRPPCCEK IGVKKGPWTP EEDIILVSYI QEHGPGNWRS VPTTTGLMRC SKSCRLRWTN  60
YLRPGIKRGN FNDHEEKMII HLQALLGNRW AAIASYLPER TDNDIKNYWN THLRKKLKKI  120
NQTGDENEVE ENSIPQVKGQ WERRLQTDIH MAKQALCEAL SLDKPTPILA ENQTSPYASN  180
TENIARLLEK WMKKPENSVE TTNSGNSIMV VTGSGSREGG QNTIACKQKD QAFDSLVSFN  240
SLNSDCSQSV SVEEKNFLAM DSCFFQYQSK PNQETQDPLM FMENWPFDDE AAQCNEDLMN  300
VSMEENTPGL F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A5e-25151174105MYB PROTO-ONCOGENE PROTEIN
1h8a_C7e-251511727128MYB TRANSFORMING PROTEIN
1mse_C5e-25151174105C-Myb DNA-Binding Domain
1msf_C5e-25151174105C-Myb DNA-Binding Domain
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.146410.0seed
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expression in flowers increases as the flowers develop. {ECO:0000269|PubMed:1840903}.
UniprotTISSUE SPECIFICITY: Expressed in flowers, leaves and weakly in seed pods. {ECO:0000269|PubMed:1840903}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g039990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1472010.0AC147201.19 Medicago truncatula clone mth2-117n1, complete sequence.
GenBankCU0248960.0CU024896.7 M.truncatula DNA sequence from clone MTH2-150P22 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003599668.20.0myb-related protein 306
SwissprotP813921e-114MYB06_ANTMA; Myb-related protein 306
TrEMBLG7IZP90.0G7IZP9_MEDTR; Putative transcription factor MYB-HB-like family
STRINGAES699190.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101634115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74650.11e-107myb domain protein 31
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]