PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr3g014280.1

Common Name

MTR_3g014280

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

Trihelix

Protein Properties

Length: 326aa MW: 37084.5 Da PI: 9.6431

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr3g014280.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	49.5	1.1e-15	37	120	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ v +L+ea+++++ +r+klk+++We+v+k++ +++ ++++qCk+k+e+++kry+ + +++ s++p++++l+ Medtr3g014280.1 37 EWSEGAVTTLLEAYESKWVLRNRAKLKGQDWEDVAKHVssrsNSTKSPKTQTQCKNKIESMKKRYRSESASSDV------SSWPLYSRLD 120 5***********************************88777778889999************99988774......5799999986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	9.6E-20	35	120	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 326 aa Download sequence Send to blast
MNEKIENKDQ IQQNQESPRK LQNNIIGSGN ERLKRDEWSE GAVTTLLEAY ESKWVLRNRA 60 KLKGQDWEDV AKHVSSRSNS TKSPKTQTQC KNKIESMKKR YRSESASSDV SSWPLYSRLD 120 LLLRGTGQLS TTTLNNNQAG LVLLEPSSLV MSHAQEEVHQ PLVPPPITTA QNSHGSNGVD 180 KLIKEDEIET KSSDHIANKN PLETDSSTPA LYSEKDEQRS KKRRMRTENN NNKRQKKETM 240 GIAESIRWVA EVVVRSEQTR METLKEIEKM RVEAEAKRGE MEIKRTEIIA NTQLEIARIF 300 ANVNNKDKDK DKDVDVDSSL RIGRS*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mtr.16368	0.0	root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr3g014280.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC126006	0.0	AC126006.22 Medicago truncatula clone mth2-4c19, complete sequence.
GenBank	CR956402	0.0	CR956402.15 M.truncatula DNA sequence from clone MTH2-50J5 on chromosome 3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003598486.1	0.0	trihelix transcription factor ASIL1
TrEMBL	G7J0H6	0.0	G7J0H6_MEDTR; Transcription factor
STRING	AES68737	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4994	33	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G54390.1	1e-100	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Medtr3g014280.1
Entrez Gene	11429189

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132]