PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g009470.1
Common NameMTR_3g009470
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 705aa    MW: 76524.6 Da    PI: 6.5124
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g009470.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY102.62.3e-32280337260
                      --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                      +DgynWrKYGqK+vkgse+prsYY+Ct+++Cpvkkkvers+ +++++ei+Y+g Hnh+k
  Medtr3g009470.1 280 EDGYNWRKYGQKQVKGSEYPRSYYKCTHSNCPVKKKVERSH-EGHITEIIYKGAHNHPK 337
                      7****************************************.***************85 PP
2WRKY102.91.9e-32494552159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      ldDgy+WrKYGqK+vkg+++prsYY+Ct agC+v+k+ver+++d k v++tYeg+Hnh+
  Medtr3g009470.1 494 LDDGYRWRKYGQKVVKGNPNPRSYYKCTNAGCTVRKHVERASHDLKSVITTYEGKHNHD 552
                      59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1182907.98E-26277338IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.1E-29277338IPR003657WRKY domain
SMARTSM007746.2E-36279337IPR003657WRKY domain
PROSITE profilePS5081123.502280338IPR003657WRKY domain
PfamPF031062.5E-25280336IPR003657WRKY domain
Gene3DG3DSA:2.20.25.808.8E-37479554IPR003657WRKY domain
SuperFamilySSF1182901.83E-28486554IPR003657WRKY domain
PROSITE profilePS5081138.32489554IPR003657WRKY domain
SMARTSM007741.9E-37494553IPR003657WRKY domain
PfamPF031067.2E-25495552IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009555Biological Processpollen development
GO:0009942Biological Processlongitudinal axis specification
GO:0030010Biological Processestablishment of cell polarity
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 705 aa     Download sequence    Send to blast
MAGIDENLAL NGDWGLPSPS PRSLFSRLLE EDNNNVIRPN SEHSGSGRTE GQDGDSGTQL  60
SDTSYPTENK WSSRGGLVDR IAARTGFNAP RLNTESIRST ELSLNSEIQS PYLTIPPGLS  120
PTTLLDSPVF LANSLAQPSP TTGKFPFVSN GNIRSTELSS DVQEKSKHNG FNDIYASSFA  180
FKPTADSGPS FYQGAGRNMN TTTLSQHSLH GFEASVQSQR VDAVNVQTEN KSSLHLKAEF  240
SDSPPQKDNS TQLEEQADEE GEQRVNGDSL VAGVGGTPSE DGYNWRKYGQ KQVKGSEYPR  300
SYYKCTHSNC PVKKKVERSH EGHITEIIYK GAHNHPKPPP SRRSGIGSTN PHADMQVDNP  360
EHGEPQGGGG GDLGWANVQK GNIAGAGNWK HDNLEATSAV NPGYGNQSTN LQTQNGTTHI  420
DSGDAVDRSS TFSNEEEEDD QGTHGSVSLG YDAEGDESES KRRKLESYAE MSGATRAIRE  480
PRVVVQTTSE VDILDDGYRW RKYGQKVVKG NPNPRSYYKC TNAGCTVRKH VERASHDLKS  540
VITTYEGKHN HDVPAARSSS HVNANASNAA QGQASGLLQN HMHRPEPSQV HNGMRPSLGS  600
FNLPGRQQLG HPHGFFGMNQ HLSNLAMSGL GPSLQAKLPG MPMNPFMMQQ QQQQQRAANE  660
MGFMLPKGEP NVDANPERGG LNMQNGSSSM YQDIMNHMPL GPHM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-36280555878Probable WRKY transcription factor 4
2lex_A1e-36280555878Probable WRKY transcription factor 4
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Low expression in senescent leaves (PubMed:11722756). Expressed in both the unfertilized egg cell and the pollen tube (PubMed:21316593). {ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:21316593}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Regulates WOX8 and WOX9 expression and basal cell division patterns during early embryogenesis. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Required to repolarize the zygote from a transient symmetric state. {ECO:0000269|PubMed:21316593}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00071PBMTransfer from AT5G56270Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g009470.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1422270.0BT142227.1 Medicago truncatula clone JCVI-FLMt-22I14 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013458833.10.0probable WRKY transcription factor 2
RefseqXP_024633691.10.0probable WRKY transcription factor 2
SwissprotQ9FG771e-179WRKY2_ARATH; Probable WRKY transcription factor 2
TrEMBLA0A072V4330.0A0A072V433_MEDTR; Putative transcription factor WRKY family
STRINGXP_004499679.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF95243443
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.11e-170WRKY DNA-binding protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Ueda M, et al.
    Transcriptional integration of paternal and maternal factors in the Arabidopsis zygote.
    Genes Dev., 2017. 31(6): p. 617-627
    [PMID:28404632]
  5. Lei R, et al.
    Arabidopsis WRKY2 and WRKY34 transcription factors interact with VQ20 protein to modulate pollen development and function.
    Plant J., 2017. 91(6): p. 962-976
    [PMID:28635025]