PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr3g005460.2
Common NameMTR_3g005460
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family B3
Protein Properties Length: 524aa    MW: 60039.4 Da    PI: 8.4404
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr3g005460.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.38.5e-11262354199
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                      f+k+ +ps    +  +++p +f++ +g++   +   t++ ++g  We+ l  +k+++  y+  k W++F++   L+ g f+ F+++g+s+f   
  Medtr3g005460.2 262 FKKAILPSPIYDKE-IRIPENFITMFGNE--LENVATVTVPDGCDWEMDL--KKCGEDvYFCNKEWQQFAEYYSLRYGCFLSFRYEGNSNF--S 348
                      67777788888776.9*******888755..556899999**********..9999888999*************************9999..8 PP

                      EEEE-S CS
               B3  94 vkvfrk 99 
                      v +f++
  Medtr3g005460.2 349 VIIFDA 354
                      888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.9E-1318116IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.73E-1521116IPR015300DNA-binding pseudobarrel domain
CDDcd100179.63E-823115No hitNo description
PROSITE profilePS508639.62924117IPR003340B3 DNA binding domain
SMARTSM010193.0E-425117IPR003340B3 DNA binding domain
SuperFamilySSF1019363.53E-6154244IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508637.331154250IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.8E-9154245IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-16260354IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-16260355IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.912261355IPR003340B3 DNA binding domain
CDDcd100173.93E-11261353No hitNo description
SMARTSM010196.3E-11262355IPR003340B3 DNA binding domain
PfamPF023621.1E-7264354IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.5E-12412517IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.12E-9413517IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508637.147415519IPR003340B3 DNA binding domain
CDDcd100171.80E-6418517No hitNo description
SMARTSM010190.044420519IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 524 aa     Download sequence    Send to blast
MKPRPRRRVP STSPAAAAEK DSKHFMKAIL PPPDHTKEIR IPDEFITRFG NELDNVATIT  60
VPDALEWDME LKKCGGQIFF CNNWQQFAEY YSIYYGCYLD FKYEGNSKFN VVIYDTTSVE  120
ISYPFQTRRT NGEANINCPS SASERSKDAA NGINPKNTSF CSKVQNNYAY VPGEFAKEHL  180
KPNVPFMLQN SQKKQWEVSG ALDRPGKPAM RITIGIRRFL RENKLLDGVI CRFKLIKKKP  240
VVVIQVTASH MAEKEVRESI HFKKAILPSP IYDKEIRIPE NFITMFGNEL ENVATVTVPD  300
GCDWEMDLKK CGEDVYFCNK EWQQFAEYYS LRYGCFLSFR YEGNSNFSVI IFDATSVEIC  360
YPLKTPSTSG ETNTECPRPM KRSKVETSES PGKKVKSMSN YAYKRAEDAA NAFNPKNPHF  420
RSKITKGRHA YVPSIFASEY LKPNAPIKLL NSHREEWKVF GIEHNARSST RKAKSPAMQI  480
TQGFSQFIRE NDLSYGDCCV YELIEENPPV LEVTMFCVVD YWD*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.187990.0pod| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr3g005460.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT0094920.0CT009492.5 M.truncatula DNA sequence from clone MTH2-93A21 on chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003598029.20.0B3 domain-containing protein REM8
TrEMBLG7IYE80.0G7IYE8_MEDTR; B3 DNA-binding domain protein
STRINGAES682800.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01580.11e-22B3 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]