PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Medtr2g105060.1 | ||||||||
Common Name | MTR_2g105060 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 317aa MW: 35318.8 Da PI: 9.4588 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 94.6 | 7.3e-30 | 168 | 227 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ ++++ pr+Y++C++a +C+vkkkv+rs +dp+vv+ tYegeHnh+ Medtr2g105060.1 168 VKDGYQWRKYGQKVTRDNPSPRAYFKCSFApSCTVKKKVQRSVDDPSVVVATYEGEHNHP 227 58***************************99****************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.8E-29 | 159 | 229 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 27.405 | 163 | 229 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.26E-25 | 166 | 229 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.0E-33 | 168 | 228 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.1E-24 | 169 | 227 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0002237 | Biological Process | response to molecule of bacterial origin | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0050691 | Biological Process | regulation of defense response to virus by host | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 317 aa Download sequence Send to blast |
MDFSSSWINT SLDLNINPRT RVHQQAAPVS FKKYEVENNF FSLGMMSISS AKEESSVALV 60 EELKRVSAEN KKLTGMLTEM CENYNTLRNN LMEYMRKNPD HKEKRKSDEI SSSNNLMGGG 120 VTGNNSESSS SDEDQSCKKP RQIVETCIKA KVSRVYFKTE SSDSSLIVKD GYQWRKYGQK 180 VTRDNPSPRA YFKCSFAPSC TVKKKVQRSV DDPSVVVATY EGEHNHPHPS QTEPTNNRCR 240 NQISPVAPSS SAPSTVTLDW TKKAPSSAPS KNMMINNPKM EVPQILVEQM ATSLTKDLNF 300 RAALAAAISG KMLHQN* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 4e-20 | 167 | 230 | 16 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 4e-20 | 167 | 230 | 16 | 78 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Mtr.8632 | 1e-134 | root |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250|UniProtKB:Q9SUP6}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00251 | DAP | Transfer from AT1G80840 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Medtr2g105060.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | JX987095 | 1e-88 | JX987095.1 Caragana korshinskii WRKY1 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_013465603.1 | 0.0 | probable WRKY transcription factor 40 | ||||
Swissprot | Q9SAH7 | 4e-93 | WRK40_ARATH; Probable WRKY transcription factor 40 | ||||
TrEMBL | A0A072VC75 | 0.0 | A0A072VC75_MEDTR; Putative transcription factor WRKY family | ||||
STRING | GLYMA13G44730.1 | 1e-122 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF973 | 34 | 115 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G80840.1 | 1e-87 | WRKY DNA-binding protein 40 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Medtr2g105060.1 |
Entrez Gene | 25487980 |