PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g099610.1
Common NameMTR_2g099610
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB_related
Protein Properties Length: 304aa    MW: 32657.6 Da    PI: 9.4292
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g099610.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.62.4e-12556147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     +++WT+eE+e l ++v+++G g Wk I +  +       R+  ++k++w+++
  Medtr2g099610.1  5 KQKWTAEEEEALHQGVQKYGAGKWKHILKDPQfsqklASRSNIDLKDKWRNL 56
                     79***********************************9************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.399162IPR017930Myb domain
SuperFamilySSF466894.09E-16258IPR009057Homeodomain-like
SMARTSM007171.7E-8459IPR001005SANT/Myb domain
PfamPF002493.3E-9556IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-14556IPR009057Homeodomain-like
CDDcd116602.79E-22657No hitNo description
SMARTSM005265.5E-13136203IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.104.1E-12138208IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150417.869138208IPR005818Linker histone H1/H5, domain H15
SuperFamilySSF467851.58E-12139208IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF005385.6E-10140203IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MGNQKQKWTA EEEEALHQGV QKYGAGKWKH ILKDPQFSQK LASRSNIDLK DKWRNLNVFP  60
GQNPKTPKGK PSGSSPAPSN ATPSPSPAPG TPAASAGTPA AAAAAAAPVN VAATPQAQTT  120
IRTPTSQPSQ NDDNAAKIYP QYNSLIFEAL STIKDPNGSD LNAIISFIEQ KHSLPQSQNF  180
RRTLGAKLRR LVGQGKLEKV QNGYKIKDTS VGVKSADDSK PPAPIEMDLP GSSNNFAYDD  240
AIKEASETLA CRLADAENKS FLATAAVRET ERYSKFGEEN DAMLKIAEEI YAKCMLGETV  300
RFT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.253120.0root| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00231DAPTransfer from AT1G72740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g099610.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1369551e-159AC136955.20 Medicago truncatula clone mth2-10p1, complete sequence.
GenBankAC1375541e-159AC137554.16 Medicago truncatula clone mth2-17j18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003597561.20.0telomere repeat-binding factor 5
TrEMBLG7IS320.0G7IS32_MEDTR; MYB transcription factor MYB91
STRINGAES678120.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32282958
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72740.25e-36MYB_related family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]