PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g098080.1
Common NameMTR_2g098080
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family Trihelix
Protein Properties Length: 446aa    MW: 50604.5 Da    PI: 6.6584
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g098080.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix67.52.6e-21114210185
         trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstcpyf 82 
                      +Wt++ v +Li++++ ++e+   +            +kk++W+ vsk m ++g+++sp+qC++k+++lnkryk+++e+ +++t ++++++ ++ 
  Medtr2g098080.1 114 KWTDNVVGLLIAVVSCVGEDGTISGvdgvkrksgvvQKKGKWKTVSKIMISKGCHVSPQQCEDKFNDLNKRYKRLNEILGRGTcCQVVENPALM 207
                      7**************999999876455566677888**********************************************757888888887 PP

         trihelix  83 dql 85 
                      d++
  Medtr2g098080.1 208 DSM 210
                      777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.7E-17112237No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MNGSGLGGGF LSGPTGGILD LESPFNRHQQ QTQLAHGQHH MNMITGLEND SNQIGLIEVK  60
NLNFGKGKGI ASSNHDNSND MSEDDEHGYG EDGNCENFFD GGKGKKGSPW QRMKWTDNVV  120
GLLIAVVSCV GEDGTISGVD GVKRKSGVVQ KKGKWKTVSK IMISKGCHVS PQQCEDKFND  180
LNKRYKRLNE ILGRGTCCQV VENPALMDSM VNLSAKAKDD VRKILSSKHL FYKEMCAYHN  240
GQRIPNSHDL DLHSYSLEHG KDSRDHDGSD DEDEDNNESE DDELDNGINI NARGDGGRME  300
GFCDRNKLSE EDGHFWPQSI GMKKLESEMA RVFQDPVKSP WEKREWIKQQ LLQLQEQNVD  360
FQAKAFELQK QQFKWLRYRS KKDRELEKLA MENKRMKFEN EHRILKLKQR EQEAEFSRSE  420
MSLDPTSIGI KRPQGREHIN LARQH*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g098080.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1614060.0AC161406.8 Medicago truncatula chromosome 2 BAC clone mth2-83p17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003597439.10.0uncharacterized protein LOC11425762
TrEMBLG7IUC50.0G7IUC5_MEDTR; Putative transcription factor Trihelix family
STRINGAES676900.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF105463240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.13e-67sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]