PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g097473.1
Common NameMTR_2g097473
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GRAS
Protein Properties Length: 657aa    MW: 74497 Da    PI: 5.7031
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g097473.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS355.67.4e-1092886533373
             GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      + L +cA+av+s d++++++lL+++++++sp gd +qRla+yf+++L+ rla       ++ + ++ +  +  + l+a+klf+ +sP+ ++++ 
  Medtr2g097473.1 288 TMLNQCAQAVASYDQRNTDELLKQIRHHSSPFGDGLQRLAHYFANGLEIRLAA------ETPSYQPLDVATAGDMLKAYKLFVTASPLQRVTNT 375
                      5799************************************************9......444555555556789******************** PP

             GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                      +  ++I + v++e+ vH+iDf+i +G+QWp+L + L+ Rp+gpp+lRiTg++ p++g   +e++eetg+rLak++++++vpfe+n+ +a+++e+
  Medtr2g097473.1 376 LLTKTIFKIVKNESSVHVIDFGICYGFQWPCLVRRLSLRPGGPPKLRITGIELPQPGfrPTERVEETGRRLAKYCKKFNVPFEYNF-IAQKWET 468
                      ********************************************************9*****************************.7****** PP

             GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
                      + le+L+++++E + V++ ++l++l+de+v+l+ +r++vLkl+++++Pkv+ +   + +++++ F +rf eal+++s+lfd++ea++pre+ +r
  Medtr2g097473.1 469 VCLEDLKIDRNEITLVSCLYRLKNLPDETVALNCPREAVLKLIRKINPKVFFHGVANGSYSAPFFPTRFKEALYHFSSLFDMFEANVPREDMQR 562
                      ********************************************************************************************** PP

             GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                      +++Er l+gr++ nv+acegaer+er et+++W+ r ++aGFk+++l+++ +++ k+++++ + + + v+ + +++++gWk+r L ++SaW
  Medtr2g097473.1 563 SMLERGLFGRDAINVIACEGAERVERPETYKQWQVRNKRAGFKQIRLDSDLVNETKTIVKEEYHKDFVVDVDGKWVLQGWKGRILNALSAW 653
                      ***************************************************************888************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.63260634IPR005202Transcription factor GRAS
PfamPF035142.5E-106288653IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 657 aa     Download sequence    Send to blast
MLSPNTFLQD FSVPNSVNQV TNGFELEDSP SSPSSSGTSS NGQFLEPTRY SNNILRYIND  60
ILMDEEDDLE QKPCMLQECL RLQAAEKSFY DVLGHNQPSP NDSTDPDGNF NCAASFERNG  120
SSCIADNSYE SNWVNHVVEF ESFPIQLKSP LIEKNYYDLT EADPVVIETQ GANHFHNGTW  180
SWNDIQPVTL EEVLPSTVPE KRSRKMDRDN DTCNEQEGRG SKVSAILSDE LEPPEILDEV  240
LLYQKGKTLT QYQQASHNVD SGGKAKETHS RLKKASTTNN AAAVDLWTML NQCAQAVASY  300
DQRNTDELLK QIRHHSSPFG DGLQRLAHYF ANGLEIRLAA ETPSYQPLDV ATAGDMLKAY  360
KLFVTASPLQ RVTNTLLTKT IFKIVKNESS VHVIDFGICY GFQWPCLVRR LSLRPGGPPK  420
LRITGIELPQ PGFRPTERVE ETGRRLAKYC KKFNVPFEYN FIAQKWETVC LEDLKIDRNE  480
ITLVSCLYRL KNLPDETVAL NCPREAVLKL IRKINPKVFF HGVANGSYSA PFFPTRFKEA  540
LYHFSSLFDM FEANVPREDM QRSMLERGLF GRDAINVIAC EGAERVERPE TYKQWQVRNK  600
RAGFKQIRLD SDLVNETKTI VKEEYHKDFV VDVDGKWVLQ GWKGRILNAL SAWVPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-4329265525380Protein SCARECROW
5b3h_A2e-4329265524379Protein SCARECROW
5b3h_D2e-4329265524379Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.152950.0glandular trichome| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g097473.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1837530.0AC183753.4 Medicago truncatula chromosome 2 BAC clone mth2-26g14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013465418.10.0scarecrow-like protein 30
TrEMBLA0A072VDE50.0A0A072VDE5_MEDTR; GRAS family transcription factor
STRINGAES676280.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.11e-164GRAS family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]