PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g097463.1
Common NameMTR_2g097463
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GRAS
Protein Properties Length: 658aa    MW: 74537 Da    PI: 4.921
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g097463.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS352.95.1e-1082896543373
             GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                      + L++cA+av+s d++++++lL+++++++sp gd +qRla+yf+++L+ r a    e+ + +p    +     + l+a+klf+  sP+ +++++
  Medtr2g097463.1 289 TMLTQCAQAVASYDQRNTNELLKQIRKHSSPFGDGLQRLAHYFANGLEIRFAA---EIPSYMPLDVVT---AGDMLKAYKLFVTSSPLQRMTNM 376
                      579*************************************************9...455445555554...889******************** PP

             GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                      +  ++I+  v++e+ vHiiDf+i +G+QWp+L+++L+ Rp+gp++lRiTg++ p++g   +e+ eetg+rL++++++++vpfe+n  +a+++e+
  Medtr2g097463.1 377 LLTNTIYSLVKNESSVHIIDFGICYGFQWPCLIKKLSMRPGGPAKLRITGIELPQPGfrPAERAEETGRRLENYCKKFNVPFEYNC-IAQKWET 469
                      ********************************************************9*****************************.7****** PP

             GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseer 282
                      ++le+L+++++E + V++ ++l++l+de+v+l+ +r++vLkl+++++Pkv+ +   + ++n++ Fl+rf eal+++s+lfd++ea++p e+ +r
  Medtr2g097463.1 470 IRLEDLKIDRNEITLVSCLYRLKNLPDETVALNCPREAVLKLIRKINPKVFFHGVANGSYNAPFFLTRFKEALYHFSSLFDMFEANVPCEDPQR 563
                      ********************************************************************************************** PP

             GRAS 283 ikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                       ++Er l+gr++ nv+acegaer+er et+++W+ r ++aGF++++++++ +++ k++++k + + + v+ + +++++gWk+r L ++SaW
  Medtr2g097463.1 564 LMLERGLFGRDAINVIACEGAERVERPETYKQWQVRNKRAGFRQIRFDSDLVNETKAMVKKEYHKDFVVDVDGKWVLQGWKGRILNALSAW 654
                      ***************************************************************888************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098560.83261635IPR005202Transcription factor GRAS
PfamPF035141.8E-105289654IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 658 aa     Download sequence    Send to blast
MLPPNTFLQD FSVPNSLNHV TNGFELEESS FSPSSVISSD EDPQYAADRY SNPFLRYISD  60
ILMDEEYDLE REPCMLQECL RLKAAEKSFY DVLGNNNPSP DGSTDLDGNF GRTVSFESNG  120
SSCTTDNSCE SDSVNLVGEF DSSYLELQTP LVEQNYYGVA QPDPVVNEQQ AANHFQNGTW  180
SWNEIQPVMV EEVSASLVPR EKRSHAMDDN DDTSNEQEGR GSKISAIFSD ELEPPEILDE  240
VLLCQQGRTL TQHQQASQTV DSGEKAKAAR SRSKKVSTTN NATVVDLWTM LTQCAQAVAS  300
YDQRNTNELL KQIRKHSSPF GDGLQRLAHY FANGLEIRFA AEIPSYMPLD VVTAGDMLKA  360
YKLFVTSSPL QRMTNMLLTN TIYSLVKNES SVHIIDFGIC YGFQWPCLIK KLSMRPGGPA  420
KLRITGIELP QPGFRPAERA EETGRRLENY CKKFNVPFEY NCIAQKWETI RLEDLKIDRN  480
EITLVSCLYR LKNLPDETVA LNCPREAVLK LIRKINPKVF FHGVANGSYN APFFLTRFKE  540
ALYHFSSLFD MFEANVPCED PQRLMLERGL FGRDAINVIA CEGAERVERP ETYKQWQVRN  600
KRAGFRQIRF DSDLVNETKA MVKKEYHKDF VVDVDGKWVL QGWKGRILNA LSAWVPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-4329365624379Protein SCARECROW
5b3h_D1e-4329365624379Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.152950.0glandular trichome| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g097463.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1837530.0AC183753.4 Medicago truncatula chromosome 2 BAC clone mth2-26g14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013465416.10.0scarecrow-like protein 30
TrEMBLA0A072VCY30.0A0A072VCY3_MEDTR; GRAS family transcription factor
STRINGAES676280.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.11e-162GRAS family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]