PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr2g093060.1 | ||||||||
Common Name | MTR_2g093060 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | AP2 | ||||||||
Protein Properties | Length: 469aa MW: 51829.9 Da PI: 8.1212 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.3 | 3.3e-17 | 133 | 182 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta Aa+a+++a+ k++g Medtr2g093060.1 133 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 182 78*******************......55************************998 PP | |||||||
2 | AP2 | 41.9 | 2.5e-13 | 225 | 275 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpseng...krkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+ +k grW+A+ g +k+++lg f+++ eAa+a+++a++k +g Medtr2g093060.1 225 SKYRGVTLHK-CGRWEAR---M---GqllGKKYIYLGLFDSEVEAARAYDKAALKCNG 275 89********.7******...5...334336**********99**********99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 2.1E-9 | 133 | 182 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-16 | 133 | 190 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 17.82 | 134 | 190 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.85E-11 | 134 | 189 | No hit | No description |
SMART | SM00380 | 3.0E-31 | 134 | 196 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 5.2E-17 | 134 | 190 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.13E-26 | 225 | 285 | No hit | No description |
Pfam | PF00847 | 6.9E-9 | 225 | 275 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-17 | 225 | 284 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 15.725 | 226 | 283 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.3E-32 | 226 | 289 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 6.6E-16 | 226 | 283 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.9E-6 | 227 | 238 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.9E-6 | 265 | 285 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 469 aa Download sequence Send to blast |
MLDLNLNEDY EDSIMLVEKL PEASSGTSNS SIVNAEASSN ITGDEDSCST RAGGVFTFNF 60 GILKVEGGND DVVVPTKEFF PVSAGTSTMM IPARKSAMDL TMDRRLGGEN GVVEVQQKPQ 120 AKKSRRGPRS RSSQYRGVTF YRRTGRWESH IWDCGKQVYL GGFDTAHAAA RAYDRAAIKF 180 RGLDADINFN LVEYEEDMNQ MKNLSKEEFV HILRRHSNGF SRGSSKYRGV TLHKCGRWEA 240 RMGQLLGKKY IYLGLFDSEV EAARAYDKAA LKCNGREAVT NFEPSTYENE MKPGAINEGG 300 SHNLDLNLGM ATPGHEPKEN KGYCQFQTVP SYNMHPGRNL KMETNVNSVI GDPSLKKLVV 360 TEQRPPMWNA TFSSFFPNQQ ERAERIGIDP SKGHPNWGWQ GHNQGTVSPV PQFSSAASSG 420 FSISATFPPN AIFQTQPINS IPQSLCFTPG SNASSQYYYQ VKSSQAPP* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.2666 | 0.0 | glandular trichome| root| stem |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr2g093060.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT141402 | 0.0 | BT141402.1 Medicago truncatula clone JCVI-FLMt-20N11 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003597137.2 | 0.0 | AP2-like ethylene-responsive transcription factor TOE3 isoform X1 | ||||
Swissprot | B8AXC3 | 1e-104 | AP21_ORYSI; APETALA2-like protein 1 | ||||
TrEMBL | G7IU38 | 0.0 | G7IU38_MEDTR; AP2-like ethylene-responsive transcription factor | ||||
STRING | AES67388 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2807 | 34 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28550.3 | 1e-117 | related to AP2.7 |
Link Out ? help Back to Top | |
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Phytozome | Medtr2g093060.1 |
Entrez Gene | 11417561 |
Publications ? help Back to Top | |||
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