PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g088170.1
Common NameMTR_2g088170, MtrDRAFT_AC157488g16v2
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 460aa    MW: 51733.1 Da    PI: 4.8145
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g088170.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.13e-163178148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+ Ed +l ++v+++G g+W+ + +  g+ R++k+c++rw ++l
  Medtr2g088170.1 31 KGPWTPHEDMILTEYVNKHGEGNWNFVQKNSGLLRCGKSCRLRWANHL 78
                     79******************************99**********9986 PP
2Myb_DNA-binding50.16.5e-1684127146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g++++eE++++++++++lG++ W++ a  ++ gRt++++k++w++
  Medtr2g088170.1  84 KGSFSEEEEKIIIELHAKLGNK-WARMATQLP-GRTDNEIKNFWNT 127
                      799*******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.7072678IPR017930Myb domain
SuperFamilySSF466892.28E-2928125IPR009057Homeodomain-like
SMARTSM007173.1E-143080IPR001005SANT/Myb domain
PfamPF002493.9E-143178IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.5E-233285IPR009057Homeodomain-like
CDDcd001671.13E-103378No hitNo description
PROSITE profilePS5129425.25279133IPR017930Myb domain
SMARTSM007171.3E-1583131IPR001005SANT/Myb domain
PfamPF002495.3E-1584127IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-2486132IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009555Biological Processpollen development
GO:0009789Biological Processpositive regulation of abscisic acid-activated signaling pathway
GO:0043068Biological Processpositive regulation of programmed cell death
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0090406Cellular Componentpollen tube
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MAKTISNNDE NVEVDIDSSK DDVDARTGMK KGPWTPHEDM ILTEYVNKHG EGNWNFVQKN  60
SGLLRCGKSC RLRWANHLRP NLKKGSFSEE EEKIIIELHA KLGNKWARMA TQLPGRTDNE  120
IKNFWNTRMK RRQRAGLPLY PPEIQAEAIA YNDKLLQLQH QPLSSSSLSF SLLLSSCYPK  180
KIDDPNHYDY NLLENNSGSA NNHNTNPCPQ FNFSNDENIE INETLALQKS PSLSPYPSSS  240
SNLFNQNFTP PSDSHDYQYS ENLSFEHHGF NAGSLYDSKT PASSYASGVD GNFMGNSSMV  300
NDYYEVAPLS HDGKNSGLLD DLVMEGRSIS CNKGDVSHKR KNMEGEEYED EEGIVPLVST  360
MKKKKSIDES QKKDFSSSQL STGKKPAQED QTEELNTMYD DDLDCLLNNF PSEIPMPEWY  420
CRGKSQSLGT EIPTDESGPT NQEFAWTLGS NWNNMPGIC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-29311327107B-MYB
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00287DAPTransfer from AT2G32460Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g088170.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1574880.0AC157488.1 Medicago truncatula chromosome 2 clone mte1-33n12, complete sequence.
GenBankAC1652750.0AC165275.5 Medicago truncatula chromosome 2 BAC clone mte1-36o22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003596969.10.0transcription factor MYB101
TrEMBLA2Q4I40.0A2Q4I4_MEDTR; Homeodomain-related
STRINGAES672200.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF99493240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32460.23e-67myb domain protein 101
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]