PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g034280.1
Common NameMTR_2g034280
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GRAS
Protein Properties Length: 578aa    MW: 65847.9 Da    PI: 4.9181
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g034280.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS294.52.8e-902015752374
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn...sseelaalkl.fsevsPil 91 
                       e Ll+cAe v  +++++a+++L ++s l+s++g+p++R+++yf+eAL +r+ +++ ++++  + + ++  +   +s+ l+ + + f+e  P++
  Medtr2g034280.1 201 AESLLACAEKVGYQQFQRARNFLPHISSLSSKTGNPVKRVVHYFAEALFQRIDKETGRVSSNNTQKIETLFDpeeVSKDLNPTLIaFFEELPFV 294
                      578***************************************************77777765543333322233355555544446******** PP

             GRAS  92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg.skeeleetgerLakfAeelgvpfefnvlva 183
                      k+s +t+ qa+ e ++ ++++H+iD++i +Gl+W  L+qaL sR+e p   l+iT+++  ++  sk  +e tg++L++fA++l++pf f+++++
  Medtr2g034280.1 295 KVSMFTCVQALIENLKDAKKIHVIDLEIRKGLHWTILMQALQSRTECPLeLLKITAIATGNTYtSKLIVEDTGKKLEDFAQSLNIPFLFDTIIV 388
                      *********************************************7665499******977768****************************** PP

             GRAS 184 krledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                      ++l+ l+ + ++ +++E++aV ++++l +  ++s +le     v+k+v++++P v+vv+e ea+hns+sF++rf+eal y+salfd+le  +  
  Medtr2g034280.1 389 SNLSHLREDLFKKDSEETVAVYSQFALRSNIQQSDQLET----VMKVVRTINPIVMVVAETEANHNSKSFVNRFIEALFYFSALFDCLEDCMKG 478
                      ******999999999***************988888888....*************************************************** PP

             GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsv 370
                      ++++r+ +E  +++  i+n++a eg er+    +   Wr+ + ++G+ + +ls k   qa+l+ ++++ ++  + + + ++l+ gWk+ p+ sv
  Medtr2g034280.1 479 DEKNRMIIESLYFSYGIRNILA-EGVERKSTDVKIDVWRAFFARFGMVETKLSMKSLYQAELVAKRFPcGNSCTFDMNGHCLLVGWKGTPINSV 571
                      *******************987.78899999999**********************************99999999****************** PP

             GRAS 371 SaWr 374
                      S+W+
  Medtr2g034280.1 572 SVWK 575
                      ***8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.868174554IPR005202Transcription factor GRAS
PfamPF035149.7E-88201575IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 578 aa     Download sequence    Send to blast
MENLWEFGEF SFDTTKNVKF SVAEDLGDCN GIESLCSNFG FFEDDPSQEE ELLLSTNQQK  60
YHHQPYLDYE AFDNFNIDMV HFDEQQCPTR ILPFCDRKKD NQYYQPSPLT PVEILKNYGK  120
GFKRLSPDEG KILHPVNDFD LVTDNQNESK LSTGDIMKIA GTRFIQSSSS SESISGLILN  180
HPFGFSFSGL SDEEKEDVSL AESLLACAEK VGYQQFQRAR NFLPHISSLS SKTGNPVKRV  240
VHYFAEALFQ RIDKETGRVS SNNTQKIETL FDPEEVSKDL NPTLIAFFEE LPFVKVSMFT  300
CVQALIENLK DAKKIHVIDL EIRKGLHWTI LMQALQSRTE CPLELLKITA IATGNTYTSK  360
LIVEDTGKKL EDFAQSLNIP FLFDTIIVSN LSHLREDLFK KDSEETVAVY SQFALRSNIQ  420
QSDQLETVMK VVRTINPIVM VVAETEANHN SKSFVNRFIE ALFYFSALFD CLEDCMKGDE  480
KNRMIIESLY FSYGIRNILA EGVERKSTDV KIDVWRAFFA RFGMVETKLS MKSLYQAELV  540
AKRFPCGNSC TFDMNGHCLL VGWKGTPINS VSVWKFI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-4320757426378Protein SCARECROW
5b3h_A2e-4320757425377Protein SCARECROW
5b3h_D2e-4320757425377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g034280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1445390.0AC144539.7 Medicago truncatula clone mth2-11o10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003594757.10.0DELLA protein RGL1
TrEMBLA0A396J7Z10.0A0A396J7Z1_MEDTR; Putative transcription factor GRAS family
TrEMBLG7IFY60.0G7IFY6_MEDTR; GRAS family transcription factor
STRINGAES650080.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47933162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.16e-58RGA-like 2
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]