PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g034250.1
Common NameMTR_2g034250, MtrDRAFT_AC152185g33v2
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GRAS
Protein Properties Length: 588aa    MW: 67184.2 Da    PI: 5.0342
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g034250.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3151.6e-962085852374
             GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn......sseelaalklfsevsP 89 
                       e Ll+cAe v  ++ e+a++lL++++ l+s++g+p++R+++yf+eAL +r+ +++ + + + +  ++ e+       s++   a+ +++e  P
  Medtr2g034250.1 208 AESLLACAEKVGYQQYERARKLLSQIESLSSKTGNPVKRVVHYFAEALCQRIDKETGRFSVSSNNMQKMESLfdpqevSKDLNPAMIALYEDLP 301
                      578***************************************************6666655544444443335666655666667777****** PP

             GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg.skeeleetgerLakfAeelgvpfefnvl 181
                      + ++s +t+ qa+le v+ ++++H+iD++i +G QW  L+qaL sR+e p   l+iT+++s +s+ sk+ +e tg+rL++fA++l++pf+f+++
  Medtr2g034250.1 302 FSQVSIFTCVQALLENVNDAKKIHVIDLEIRKGCQWTILMQALQSRNECPLeLLKITAIESGNSDtSKHIVEDTGKRLKDFAQSLNIPFSFDIV 395
                      ***********************************************7665499*******999899*************************** PP

             GRAS 182 vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275
                      v+++l  ++ e ++++++E++aV ++++l +  +++ +le     +++++++++P v+vv+e ea+hns+sF++rf+eal y+sa fd++e+ +
  Medtr2g034250.1 396 VVSDLLHIREELFKIDSEETVAVYSQFALRSKIQQPDKLET----IMRVIRTINPIVMVVAEIEANHNSKSFVNRFIEALFYFSAYFDCFETCM 485
                      *******************************9988888888....************************************************* PP

             GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve..eesgslvlgWkdrpL 367
                        ++++r  +E ++++  i+n+va egaer+ r+ +   Wr+ ++++G+ + +ls k   qa+l+ ++++  gy      + ++l+ gWk+ p+
  Medtr2g034250.1 486 KGDEKNRFILESMYFSHGIRNIVAEEGAERKSRNVKIDVWRAFFTRFGMVETELSMKSLYQAELVAKRFA-CGYACTfdMNGHCLLVGWKGTPI 578
                      **********************************************************************.666665216688999******** PP

             GRAS 368 vsvSaWr 374
                       svS+W+
  Medtr2g034250.1 579 NSVSVWK 585
                      ******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098545.971181564IPR005202Transcription factor GRAS
PfamPF035145.7E-94208585IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 588 aa     Download sequence    Send to blast
MENLYNLGDF SFNIVEDKLS SSNDTFWETK GHNEMKNVQF SVAEDLGDYN GIESLCSNFG  60
FFQDDPSYQE NEFLKFHHQQ QESYQDYETF DNLHFDMVHF GDTKKDQPFY QTPLAPVDIL  120
KNYGKGFKRL LPDDEGNILH PVNDFGLVTN NENEKKLLST IEIMKMAGTR FIQSSSSSKS  180
ASGLILNHPF GFSFSGLSDE EKENVSLAES LLACAEKVGY QQYERARKLL SQIESLSSKT  240
GNPVKRVVHY FAEALCQRID KETGRFSVSS NNMQKMESLF DPQEVSKDLN PAMIALYEDL  300
PFSQVSIFTC VQALLENVND AKKIHVIDLE IRKGCQWTIL MQALQSRNEC PLELLKITAI  360
ESGNSDTSKH IVEDTGKRLK DFAQSLNIPF SFDIVVVSDL LHIREELFKI DSEETVAVYS  420
QFALRSKIQQ PDKLETIMRV IRTINPIVMV VAEIEANHNS KSFVNRFIEA LFYFSAYFDC  480
FETCMKGDEK NRFILESMYF SHGIRNIVAE EGAERKSRNV KIDVWRAFFT RFGMVETELS  540
MKSLYQAELV AKRFACGYAC TFDMNGHCLL VGWKGTPINS VSVWKFI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-392045851375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g034250.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1445390.0AC144539.7 Medicago truncatula clone mth2-11o10, complete sequence.
GenBankAC1521850.0AC152185.1 Medicago truncatula chromosome 2 clone mth2-97e5, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003594754.10.0DELLA protein RGL1
TrEMBLA2Q2X80.0A2Q2X8_MEDTR; GRAS family transcription factor
STRINGAES650050.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47933162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G03450.12e-57RGA-like 2
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]