PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr2g030700.1 | ||||||||
Common Name | MTR_2g030700 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | HB-other | ||||||||
Protein Properties | Length: 161aa MW: 18447.1 Da PI: 9.5157 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 43.5 | 5.4e-14 | 25 | 70 | 7 | 52 |
--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS Homeobox 7 ftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 +++ q +Lee F+ +yp+ +++ e+A++lgL+ +qV WF +R Medtr2g030700.1 25 HSPAQRLRLEEIFQTIKYPTNKQKSEIAEELGLQPKQVNWWFTYKR 70 6899**************************************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 2.33E-12 | 14 | 77 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 12.73 | 16 | 76 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.6E-6 | 18 | 80 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 4.4E-13 | 20 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.51E-8 | 24 | 66 | No hit | No description |
Pfam | PF00046 | 2.3E-11 | 25 | 70 | IPR001356 | Homeobox domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MDLSLGLAPT ENKSSNEEQG AFPRHSPAQR LRLEEIFQTI KYPTNKQKSE IAEELGLQPK 60 QVNWWFTYKR GLVKNATQKE VNAAFRAEIQ MLLEEKREME RQNRVSCQAC RDSRLKQLRL 120 ENELLKEKLS KLNPSCVGKG ELSLELKLGL PQRSSDGTYL * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr2g030700.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC147010 | 2e-86 | AC147010.32 Medicago truncatula clone mth2-145p5, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003594569.3 | 4e-86 | homeobox-leucine zipper protein HDG8 | ||||
TrEMBL | G7IMI5 | 1e-112 | G7IMI5_MEDTR; Homeobox KN domain protein | ||||
STRING | AES64821 | 1e-113 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF23029 | 2 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17320.1 | 2e-13 | homeodomain GLABROUS 9 |
Link Out ? help Back to Top | |
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Phytozome | Medtr2g030700.1 |
Entrez Gene | 11416793 |
Publications ? help Back to Top | |||
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