PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr2g027860.2

Common Name

MTR_2g027860

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

G2-like

Protein Properties

Length: 331aa MW: 36109.4 Da PI: 6.7093

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr2g027860.2	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.8	5.8e-34	49	103	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt+eLHerFv+av+qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl Medtr2g027860.2 49 KQRLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRL 103 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.813	46	106	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.8E-32	48	104	IPR009057	Homeodomain-like
SuperFamily	SSF46689	9.32E-18	48	103	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-25	49	104	IPR006447	Myb domain, plants
Pfam	PF00249	1.3E-9	51	102	IPR001005	SANT/Myb domain
Pfam	PF14379	1.8E-23	136	182	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 331 aa Download sequence Send to blast
MYHPTNVPDS SLVGSNPLVH GQHIDSGRSA MDPGSGGNSL ANNSNLNSKQ RLRWTHELHE 60 RFVDAVAQLG GPDRATPKGV LRVMGVQGLT IYHVKSHLQK YRLAKYLPDC SSDEGKKTDK 120 KETGDMLSNL DGSSGMQITE ALKLQMEVQK RLHEQLEVQR QLQLRIEAQG KYLKKIIEEQ 180 QRLSGVLSEA PGSGVSAPTP GDMFQQELDN KTEPATPDPE KAAKEHAPAK SLSAESFSSH 240 HEPMTPDSGC QVGSPADSPN GERSTKKQRV SVEGAYLKSD MVLPHQILES SMPSYQQPNA 300 IFLTQDHFDP SLGLSTRSGE ELDKLGGRNM *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-23	49	106	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-23	49	106	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-23	49	106	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-23	49	106	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-23	49	106	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-23	49	106	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-23	49	106	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-23	49	106	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-23	49	106	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-23	49	106	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-23	49	106	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-23	49	106	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mtr.10993	0.0	flower\| leaf\| pod\| root\| stem

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00252	DAP	Transfer from AT2G01060	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr2g027860.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT143618	0.0	BT143618.1 Medicago truncatula clone JCVI-FLMt-6M11 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003594371.1	0.0	myb family transcription factor PHL7
Refseq	XP_024631417.1	0.0	myb family transcription factor PHL7
Swissprot	Q9SJW0	1e-118	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	G7ISP0	0.0	G7ISP0_MEDTR; Myb-like transcription factor family protein
STRING	AES64622	0.0	(Medicago truncatula)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	5e-98	G2-like family protein

Link Out ? help Back to Top
Phytozome	Medtr2g027860.2
Entrez Gene	11411079

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132]