PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g026725.1
Common NameMTR_2g026725
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family Trihelix
Protein Properties Length: 380aa    MW: 42411.5 Da    PI: 8.1109
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g026725.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix87.12.1e-27262346186
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      rW++ ev+aLi++r+ +e++++   +k+  Wee++ +++  g++rs+k+Ckekwen+nk+y+++  + kkr + +s+tcpyfd+l+
  Medtr2g026725.1 262 RWPDVEVQALIAVRTALEHKFGHMGSKGSIWEEIAGALQGMGYNRSAKKCKEKWENINKYYRRTVGSGKKR-PVNSKTCPYFDELD 346
                      8******************************************************************9997.99999*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.4E-4154186IPR009057Homeodomain-like
PROSITE profilePS500907.271255319IPR017877Myb-like domain
PfamPF138374.6E-21261348No hitNo description
CDDcd122034.45E-24261325No hitNo description
Gene3DG3DSA:1.10.10.606.4E-4289318IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 380 aa     Download sequence    Send to blast
MDSMNLLAAD HVAPFPDSGD LIFAAGLLSN HHNPQKLIPI RSIPPPPPPP GFPAHHSPPP  60
PSVKVEDPSR SGSGHSSLPL CQEPGSSSDD VGNSSASTKE FGSRKRRRKS SRKLEDFAAN  120
LVKKMTEKQE QMHKEMVEMI ERMEKERIKR EEAWKREEME RIKQDEEARA AERSRSLALI  180
SLIQKLLGYE IQIPPPAEGS GIREEDEVEV NNNNNSPPLT HNMGSAEVNN NTNSLALIQY  240
VGPAEVRNKR KDFNSSDPSN NRWPDVEVQA LIAVRTALEH KFGHMGSKGS IWEEIAGALQ  300
GMGYNRSAKK CKEKWENINK YYRRTVGSGK KRPVNSKTCP YFDELDNLYR NGSLERNGNA  360
LSSTNNVSIR EEKEQGEIS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103107RKRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00552DAPTransfer from AT5G47660Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g026725.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013462948.10.0trihelix transcription factor GTL1
TrEMBLA0A072V6L90.0A0A072V6L9_MEDTR; Myb/SANT-like DNA-binding domain protein
STRINGXP_004486348.11e-153(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF111123338
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.25e-34Trihelix family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]