PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g024380.1
Common NameMTR_2g024380
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 471aa    MW: 52178.6 Da    PI: 5.8955
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g024380.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY85.16.6e-27251309259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +D ++WrKYGqK++kgs++prsYY+C++  +Cp+++kve++++++++ ++tYegeHnh 
  Medtr2g024380.1 251 KDPWAWRKYGQKPIKGSPHPRSYYKCSTWsDCPARRKVEKCKTQESTYIVTYEGEHNHA 309
                      799***********************9987****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-28240311IPR003657WRKY domain
SuperFamilySSF1182909.02E-24243311IPR003657WRKY domain
PROSITE profilePS5081128.667245311IPR003657WRKY domain
SMARTSM007741.7E-29250310IPR003657WRKY domain
PfamPF031068.2E-23252308IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MDNDDRDLFS IVRSCNATTF TTPTTIFENS PPPQIETTTN NITFTQSATP FCSDDFTFNP  60
EKSPVSFSPL KPNDFIDLDK LMINFNPIPT PAITSMPKIN TTTNTVPSPL TTTIPTHITN  120
INTSVHVIHT PTTPPTITPI ITATTTTIIT PTTITPIRSD ASTTMTKTSA HETNQYPTNY  180
NFPILAGQQQ IQKNINNQVS LPKPVACIDI TTAHFDRAYN HPSVVLFGSR KRKHNNQMAL  240
VCYMREDELP KDPWAWRKYG QKPIKGSPHP RSYYKCSTWS DCPARRKVEK CKTQESTYIV  300
TYEGEHNHAK PTFNKNVVVG TSQCKSPKTG LHSAEEIGSS TNITKSGSPN VVMLQIDHPE  360
SSNAQVLADQ SKILYPEMEL LESQLPVVEE VGSSSNVRNL GSHNKMIIEF DEPQSSNVTG  420
VVGDSNLPYS ETGFIGSFDD DDDILIPNIT AWSEDYLMDF NRLNGVAIFP *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A1e-152463111377Probable WRKY transcription factor 4
2lex_A1e-152463111377Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g024380.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1465571e-108AC146557.33 Medicago truncatula clone mth2-11l13, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024632663.11e-175probable WRKY transcription factor 29
TrEMBLA0A072V4M00.0A0A072V4M0_MEDTR; WRKY DNA-binding domain protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1787927
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.12e-27WRKY DNA-binding protein 27
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]