PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr2g023580.1

Common Name

MTR_2g023580

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

G2-like

Protein Properties

Length: 239aa MW: 26333.9 Da PI: 10.0294

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr2g023580.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.2	1.8e-33	56	109	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH++Fv+av++LGG+++AtPk +l lm+vkgLt++hvkSHLQ+YR+ Medtr2g023580.1 56 PRLRWTPDLHRCFVHAVQRLGGEDRATPKMVLTLMNVKGLTISHVKSHLQMYRS 109 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.2E-32	52	112	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.383	52	112	IPR017930	Myb domain
SuperFamily	SSF46689	5.02E-16	54	111	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.3E-25	56	110	IPR006447	Myb domain, plants
Pfam	PF00249	2.5E-8	57	108	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MSSSSSSSSP SSGVVDTNPS QPSDVPIFRR RLDSDQTPEM SLKAPVVRPY VRSKLPRLRW 60 TPDLHRCFVH AVQRLGGEDR ATPKMVLTLM NVKGLTISHV KSHLQMYRSM KQEQMIEAAK 120 RKDMAAGLSV SAISSALVPS YQLSHGQRMG AYWLESFNGT QGNQSIVICN GDEQKMHTYI 180 LFDGILKGQT VQGTKSDQQR FGDIIRRGER VNEDTVLSPS TNSGGPNTND VSLELKLN*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	4e-19	57	111	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	4e-19	57	111	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	4e-19	57	111	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	4e-19	57	111	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr2g023580.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013462843.2	1e-178	protein PHOSPHATE STARVATION RESPONSE 3
TrEMBL	A0A072V6D0	1e-176	A0A072V6D0_MEDTR; Myb-like DNA-binding domain, shaqkyf class protein
STRING	GLYMA09G00685.1	3e-81	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF9381	28	40

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02060.1	1e-33	G2-like family protein

Link Out ? help Back to Top
Phytozome	Medtr2g023580.1
Entrez Gene	25486179

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132]