PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr2g016770.1
Common NameMTR_2g016770
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 217aa    MW: 23679.3 Da    PI: 5.1689
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr2g016770.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.41.9e-303593259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY  2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
                     +D ++WrKYGqK++kgs++pr+YYrC+s+ +Cp++k+ver++ dp+v+ +tY+++Hnh 
  Medtr2g016770.1 35 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkNCPARKQVERNHMDPTVLLVTYTSDHNHA 93
                     69*************************998****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.6E-312895IPR003657WRKY domain
SuperFamilySSF1182906.41E-263195IPR003657WRKY domain
SMARTSM007747.0E-343494IPR003657WRKY domain
PROSITE profilePS5081130.9743595IPR003657WRKY domain
PfamPF031061.5E-253692IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MERSSLSSSA KRRGIKKRVV EIPMKNVEGT NTPPSDSWAW RKYGQKPIKG SPYPRGYYRC  60
SSSKNCPARK QVERNHMDPT VLLVTYTSDH NHAVPPPRNY RNTSNNTASN KDSESEQEPD  120
ETFTNIEENS MIATGDELGG WFGDVEAIGS PAVLECPIFS EKEVSMLGEE EMSLFADLGE  180
LPECSAVFWR GRRSGAGAGA SGDVSVGPLV EANCSL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-1835961575WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.118900.0leaf| root
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr2g016770.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013462609.11e-160probable WRKY transcription factor 65
SwissprotQ9LP563e-56WRK65_ARATH; Probable WRKY transcription factor 65
TrEMBLA0A072V5L01e-159A0A072V5L0_MEDTR; Putative transcription factor WRKY family
STRINGXP_004485928.11e-121(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27703475
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29280.17e-58WRKY DNA-binding protein 65
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Singh V,Roy S,Singh D,Nandi AK
    Arabidopsis flowering locus D influences systemic-acquired-resistance- induced expression and histone modifications of WRKY genes.
    J. Biosci., 2014. 39(1): p. 119-26
    [PMID:24499796]