PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Medtr2g014300.1 | ||||||||
Common Name | MTR_2g014300 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 173aa MW: 18619.2 Da PI: 10.5 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.1 | 3e-20 | 14 | 64 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+GVr ++ +gr++AeIrd ++ ++r++lg+f+t+eeAa a++ a+++l+g+ Medtr2g014300.1 14 HYRGVRKRP-WGRYAAEIRDpWK----KTRVWLGTFDTPEEAALAYDGAARSLRGA 64 69*******.**********883....5*************************995 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 3.04E-29 | 14 | 73 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 8.8E-32 | 14 | 71 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 22.721 | 14 | 71 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 3.4E-22 | 14 | 71 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.0E-13 | 14 | 63 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.7E-35 | 14 | 77 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.9E-11 | 15 | 26 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.9E-11 | 37 | 53 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 173 aa Download sequence Send to blast |
MASSSTSSAN REGHYRGVRK RPWGRYAAEI RDPWKKTRVW LGTFDTPEEA ALAYDGAARS 60 LRGAKAKTNF PPAPVAGGLC LDLNAPSSDL RWPSVPSRGR VLTEFLQTGV LKDFNPPPPP 120 PIGGVVGQRH NEVTLAVAGR TMVAENSPTA AYLGLVRRGI PIDLNEPPPL WL* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-21 | 14 | 71 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 2e-21 | 14 | 71 | 5 | 63 | ATERF1 |
3gcc_A | 2e-21 | 14 | 71 | 5 | 63 | ATERF1 |
5wx9_A | 1e-20 | 12 | 71 | 12 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Mtr.15211 | 0.0 | root| stem |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00645 | PBM | Transfer from LOC_Os05g41760 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Medtr2g014300.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AC155157 | 0.0 | AC155157.1 Medicago truncatula chromosome 2 BAC clone mth2-53f22, complete sequence. | |||
GenBank | BT137235 | 0.0 | BT137235.1 Medicago truncatula clone JCVI-FLMt-4H21 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003593626.1 | 1e-122 | ethylene-responsive transcription factor 12 | ||||
Swissprot | Q94ID6 | 2e-42 | ERF81_ARATH; Ethylene-responsive transcription factor 12 | ||||
TrEMBL | G7ISE4 | 1e-120 | G7ISE4_MEDTR; Ethylene response factor | ||||
STRING | AES63877 | 1e-121 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF330 | 34 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G28360.1 | 5e-45 | ERF domain protein 12 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Medtr2g014300.1 |
Entrez Gene | 11442909 |
Publications ? help Back to Top | |||
---|---|---|---|
|