PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr2g008840.3 | ||||||||
Common Name | MTR_2g008840 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | CAMTA | ||||||||
Protein Properties | Length: 1001aa MW: 112003 Da PI: 5.7588 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 154.1 | 3.1e-48 | 2 | 95 | 24 | 118 |
CG-1 24 heltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywlLeeelekivlvhylev 117 +++t e++trp+sgsl+L++rk++ryfrkDG++w+kkkdgktv+E+hekLKvg+v++l+cyYah+een++fqrr+ywlLe++ ++iv+vhylev Medtr2g008840.3 2 FHITPEPHTRPPSGSLFLFDRKVLRYFRKDGHNWRKKKDGKTVKEAHEKLKVGSVDALHCYYAHGEENENFQRRSYWLLEQD-THIVFVHYLEV 94 78899*****************************************************************************.*********98 PP CG-1 118 k 118 k Medtr2g008840.3 95 K 95 5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01076 | 4.5E-54 | 1 | 95 | IPR005559 | CG-1 DNA-binding domain |
PROSITE profile | PS51437 | 67.24 | 1 | 100 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 1.2E-42 | 2 | 94 | IPR005559 | CG-1 DNA-binding domain |
CDD | cd00102 | 0.00439 | 413 | 501 | No hit | No description |
Pfam | PF01833 | 8.4E-8 | 413 | 489 | IPR002909 | IPT domain |
Gene3D | G3DSA:2.60.40.10 | 4.1E-6 | 414 | 493 | IPR013783 | Immunoglobulin-like fold |
SuperFamily | SSF81296 | 1.15E-17 | 414 | 499 | IPR014756 | Immunoglobulin E-set |
SuperFamily | SSF48403 | 2.8E-19 | 589 | 708 | IPR020683 | Ankyrin repeat-containing domain |
Pfam | PF12796 | 3.0E-8 | 596 | 675 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 20.022 | 597 | 718 | IPR020683 | Ankyrin repeat-containing domain |
Gene3D | G3DSA:1.25.40.20 | 2.4E-19 | 602 | 709 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 7.83E-16 | 603 | 700 | No hit | No description |
PROSITE profile | PS50088 | 9.19 | 614 | 646 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 740 | 614 | 643 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 10.018 | 647 | 679 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 0.002 | 647 | 676 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 2300 | 686 | 715 | IPR002110 | Ankyrin repeat |
SMART | SM00015 | 0.092 | 824 | 846 | IPR000048 | IQ motif, EF-hand binding site |
SuperFamily | SSF52540 | 1.35E-7 | 824 | 875 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
PROSITE profile | PS50096 | 8.023 | 826 | 854 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.0024 | 827 | 845 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.0038 | 847 | 869 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 9.413 | 848 | 872 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 2.1E-4 | 850 | 869 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0071275 | Biological Process | cellular response to aluminum ion | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1001 aa Download sequence Send to blast |
MFHITPEPHT RPPSGSLFLF DRKVLRYFRK DGHNWRKKKD GKTVKEAHEK LKVGSVDALH 60 CYYAHGEENE NFQRRSYWLL EQDTHIVFVH YLEVKSNKSN IGGNADSNEV ISDSQKVNSP 120 SSGIPATYSS VPSLSTDSMS PTSSYTSLRE DADSGDHGQS SVSGMDYIPP FSRDTFRGNG 180 ATCIDGQASW DTVLQSTAEL HADPSLVSFT SIPSGSLSNI LDQEDNILGD FSMSRSGLAI 240 GAGSSQPLQS NWQIPFEDNT GHMPTFTQSL SLEFASDYGT GLLGNESDNG SSIIDPVLFS 300 FHGEPKEKLA QQNYLEEKVD GHPRDDLKSN STKEVPSEET INYPLPVRRT LLDRDESLRK 360 VDSFNRWITK ALGEVDDLNM QSSPGISWSA DDCGHVIDDT SLSPSLSQDQ LYSITDFSPK 420 WAYAESDTEV LIIGSFLKSQ PDVTACNWSC MFGEVEVPAE VVANGILCCQ APPHKVGRVP 480 FYVTCANRLA CSEVREFDFR DGYSRNVDYT DFFNSSNDML LHLRLEEFLS LKPVHPSNQT 540 FEGDTEKRSL ILKLISLREE EEYSSKEEQT VEMDISRHKV KKHLFHRQFK EKLYSWLLHK 600 VTESGKGPNV LDKDGQGVLH LAAGLGYDWA IILILAAGVN INFRDVNGWT ALHWAASCGR 660 ERTVGALVHM GADCGALTDP SPEFPSGRTA ADLASSNGNK GLSGFLAESS LTSHLESLTV 720 DDLHKGGQQE VSRTKAVQTV SERTATPVIY NDMPDALCLK DSLTAVRNAT QAADRIHQVF 780 RMQSFQRKQL TQDEDDDDEF GLLDQRALSL LASKARKSGQ GDGLVNAAAT QIQKKFRGWK 840 KRKEFLLIRQ RIVKIQAHVR GHQVRKQYKT VIWSVGILEK IILRWRRKGS GLRGFRPEAL 900 NKAPSQQNDS LKEDDYDYLK EGRKQKEEKI QKALSRVKSM VQYPEARAQY RRVLNVVEDF 960 RQKKDCNMGM SSEETVDGVE DLIDIDMLLD DENFNPIAFD * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.8266 | 0.0 | leaf| root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: During leaf developlement, expressed in young leaf primordia, hydathodes of young leaf tips, hydathodes of the lobes in maturating leaves and lamina within the minor veins in adult leaves. During flower development, expressed in developing stamens, germinating pollen grains, ovules and developing seeds. {ECO:0000269|PubMed:20383645}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, stems, leaves, pollen and siliques. {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:14581622}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds calmodulin in a calcium-dependent manner in vitro (PubMed:11925432). Binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Involved in freezing tolerance (PubMed:19270186). Involved in freezing tolerance in association with CAMTA2 and CAMTA3. Contributes together with CAMTA2 and CAMTA3 to the positive regulation of the cold-induced expression of DREB1A/CBF3, DREB1B/CBF1 and DREB1C/CBF2 (PubMed:23581962). Involved in drought stress responses by regulating several drought-responsive genes (PubMed:23547968). Involved in auxin signaling and responses to abiotic stresses (PubMed:20383645). Activates the expression of the V-PPase proton pump AVP1 in pollen (PubMed:14581622). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:11925432, ECO:0000269|PubMed:14581622, ECO:0000269|PubMed:19270186, ECO:0000269|PubMed:20383645, ECO:0000269|PubMed:23547968, ECO:0000269|PubMed:23581962, ECO:0000305|PubMed:11925432}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00043 | PBM | Transfer from AT5G64220 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr2g008840.3 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by UVB, wounding, ethylene and methyl jasmonate (PubMed:12218065). Induced by salt stress and heat shock (PubMed:12218065, PubMed:20383645). Induced by aluminum (PubMed:25627216). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:20383645, ECO:0000269|PubMed:25627216}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC187465 | 0.0 | AC187465.3 Medicago truncatula chromosome 2 BAC clone mth2-69g14, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003593198.2 | 0.0 | calmodulin-binding transcription activator 2 isoform X2 | ||||
Swissprot | Q9FY74 | 0.0 | CMTA1_ARATH; Calmodulin-binding transcription activator 1 | ||||
TrEMBL | A0A072V533 | 0.0 | A0A072V533_MEDTR; Calmodulin-binding transcription activator 1 | ||||
STRING | AES63449 | 0.0 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G09410.1 | 0.0 | ethylene induced calmodulin binding protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr2g008840.3 |
Entrez Gene | 11433865 |
Publications ? help Back to Top | |||
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