PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g116010.1
Common NameMTR_1g116010
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GATA
Protein Properties Length: 247aa    MW: 27591.4 Da    PI: 10.0817
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g116010.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.32.2e-18166199134
             GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                      C++C +tkTp+WR gp+g+ktLCnaCG++y++ +
  Medtr1g116010.1 166 CTHCEATKTPQWRTGPEGPKTLCNACGVRYKSGR 199
                      *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004011.2E-15160210IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.56E-14164223No hitNo description
PROSITE profilePS5011412.334164196IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.3E-14164197IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.67E-14165214No hitNo description
PROSITE patternPS003440166191IPR000679Zinc finger, GATA-type
PfamPF003205.1E-16166200IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MALPKLKQDM IYEMEFQQKG NDILSLEWLS DIVDDSRDEN ITMKKVEQHP SSSVNKEDFV  60
LPKSNSSPTC EKTTVRRTRS KRPRLATFSS HHSTMQLISS TSSFVGENMQ DSVISNKGAS  120
TEKFPDSQIA AKKQKLSSGE SKKNKKTKAP LLAALDHNAL GLVRQCTHCE ATKTPQWRTG  180
PEGPKTLCNA CGVRYKSGRL CPEYRPAASS TFSPDLHSNS HKKILEMRVM RRKDNKNSGI  240
LALEYM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17681RTRSKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g116010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1465480.0AC146548.12 Medicago truncatula clone mth2-2p3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003592781.10.0GATA transcription factor 5
TrEMBLG7IF160.0G7IF16_MEDTR; GATA type zinc finger transcription factor family protein
STRINGAES630320.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF48873356
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.22e-38GATA transcription factor 11
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]