PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g112370.1
Common NameMTR_1g112370
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family G2-like
Protein Properties Length: 335aa    MW: 37505.6 Da    PI: 8.2729
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g112370.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like103.81e-322376255
          G2-like  2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55
                     prlrWtpeLH++Fv+a++ LGG++kAtPk +l+lm++kgLt++hvkSHLQ+YR+
  Medtr1g112370.1 23 PRLRWTPELHRCFVHAIQTLGGHHKATPKLVLQLMDIKGLTISHVKSHLQMYRS 76
                     8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.9E-311978IPR009057Homeodomain-like
PROSITE profilePS512949.5591979IPR017930Myb domain
SuperFamilySSF466892.51E-152176IPR009057Homeodomain-like
TIGRFAMsTIGR015571.9E-232376IPR006447Myb domain, plants
PfamPF002492.0E-82475IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MSSSCGREGG GGAVRQYIRS KVPRLRWTPE LHRCFVHAIQ TLGGHHKATP KLVLQLMDIK  60
GLTISHVKSH LQMYRSMRGE LGRQGRTSSQ HRNQCLEEHD DGCVDEVNDV NVEHSLRRDS  120
DSSFIGHSNN FSKRARIERR SSTTSLQCSS ERRRICDDAV TKPYCFYDYV QLNANANTNT  180
NTNTMGDQHD LQLLQNKKGI KDEQQFYAWQ RQIQPPNSTL LPDFGINLTS FKSLNQESDF  240
SQASNVNDRK SPSWSINGVV KTDRAHVEGG HELSLSLTLQ NPSPQTSNAS YSASEISEAI  300
SCPNPSYNYK DCSRISSTVN ERINLDLSLA ICGN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A2e-192478357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B2e-192478357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C2e-192478357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D2e-192478357Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.21260.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g112370.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013470305.10.0uncharacterized protein LOC25485600
TrEMBLA0A072VSF00.0A0A072VSF0_MEDTR; Myb-like DNA-binding domain, shaqkyf class protein
STRINGXP_004497172.11e-143(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55393353
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02060.13e-34G2-like family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]