PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g112270.2
Common NameMTR_1g112270
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 572aa    MW: 60251.1 Da    PI: 9.5929
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g112270.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.22.9e-057395123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     + C+ C+k F r  nL+ H r H
  Medtr1g112270.2 73 FICEVCNKGFQREQNLQLHRRGH 95
                     89*******************88 PP
2zf-C2H211.90.00069149171123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC +C+k +  +s+ k H +t+
  Medtr1g112270.2 149 WKCDKCSKKYAVQSDWKAHSKTC 171
                      58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.7E-77295No hitNo description
Gene3DG3DSA:3.30.160.606.3E-67295IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.00527395IPR015880Zinc finger, C2H2-like
PfamPF121712.8E-57395IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.997395IPR007087Zinc finger, C2H2
PROSITE patternPS0002807595IPR007087Zinc finger, C2H2
SMARTSM00355130114144IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.606.4E-5137170IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.7E-7144169No hitNo description
SMARTSM00355150149169IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 572 aa     Download sequence    Send to blast
MATSSSSASL FGFREEDPNP MNQQQHSLPP SSSTATPAAA PAPKKKRNQP GTPNPDAEVI  60
ALSPKTLMAT NRFICEVCNK GFQREQNLQL HRRGHNLPWK LKQKTTKEPK RKVYLCPEPT  120
CVHHDPSRAL GDLTGIKKHY SRKHGEKKWK CDKCSKKYAV QSDWKAHSKT CGTREYRCDC  180
GTLFSRRDSF ITHRAFCDAL AQEGPRQPPI SLTGAIGSHL YGSSSNNNTM GLSIAQVAAQ  240
MPNMQQQDHH SSNSATEILR LGAAAANRSG QFDHHMLPQA TFRPNSFFNN NIHEPNQNFV  300
PHDPSQQQGL MMQNSHNSNN SNLFNMPNFL SSNSTNSSNN SFSEHLNVNN EGTNFFNGSG  360
GTSSAPSLFS NVFSQGGNSN INAAAGTAIS SMSATALLQK AAQMGATSSN GNGTTATSLL  420
KSFGNNTGAS NSTSSGGGDH SRVQMGGGSG NYGFGGGNHE QSNLQDLMNS FAATGNTSIF  480
DQSGGGGGGG VGLGRGGGDS SQLTRDFLGV GHEIVRSMSG VVGGQRDQHA AAFNLAASLE  540
GDQRNNINAA QSFGGGRGGA GGGGGAGANF H*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-34145211369Zinc finger protein JACKDAW
5b3h_F2e-34145211369Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1554562GGRGGAGGG
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.95900.0pod| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in leaf tissues. {ECO:0000305|PubMed:22898356}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a positive regulator of the starch synthase SS4. Controls chloroplast development and starch granule formation (PubMed:22898356). Binds DNA via its zinc fingers (PubMed:24821766). Recognizes and binds to SCL3 promoter sequence 5'-AGACAA-3' to promotes its expression when in complex with RGA (PubMed:24821766). {ECO:0000269|PubMed:22898356, ECO:0000269|PubMed:24821766}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00255DAPTransfer from AT2G02070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g112270.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1604541e-170AC160454.31 Glycine max cultivar Williams 82 clone gmw1-15k6, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013470290.10.0protein indeterminate-domain 5, chloroplastic
RefseqXP_024627898.10.0protein indeterminate-domain 5, chloroplastic
SwissprotQ9ZUL31e-131IDD5_ARATH; Protein indeterminate-domain 5, chloroplastic
TrEMBLA0A072VSD20.0A0A072VSD2_MEDTR; C2H2 zinc finger protein, putative
STRINGXP_004497164.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02080.11e-103indeterminate(ID)-domain 4
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]