PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g110460.1
Common NameMTR_1g110460
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 312aa    MW: 35803 Da    PI: 7.5532
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g110460.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.14.2e-182875148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT eEd ll+++++++G g+W+  a+  g++Rt+k+c++rw++yl
  Medtr1g110460.1 28 RGPWTLEEDSLLIHYIARHGEGRWNMLAKSAGLKRTGKSCRLRWLNYL 75
                     89********************************************97 PP
2Myb_DNA-binding52.61.1e-1681124146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T++E++l+++++ ++G++ W++Ia++++ gRt++++k++w++
  Medtr1g110460.1  81 RGNLTPQEQLLILELHSKWGNR-WSKIAQHLP-GRTDNEIKNYWRT 124
                      7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129417.8872375IPR017930Myb domain
SuperFamilySSF466894.87E-3126122IPR009057Homeodomain-like
SMARTSM007172.4E-152777IPR001005SANT/Myb domain
PfamPF002491.6E-162875IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-232982IPR009057Homeodomain-like
CDDcd001672.78E-123075No hitNo description
PROSITE patternPS0017504352IPR001345Phosphoglycerate/bisphosphoglycerate mutase, active site
PROSITE profilePS5129425.75176130IPR017930Myb domain
SMARTSM007172.7E-1580128IPR001005SANT/Myb domain
PfamPF002491.1E-1581124IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-2383129IPR009057Homeodomain-like
CDDcd001676.38E-1285124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009686Biological Processgibberellin biosynthetic process
GO:0009751Biological Processresponse to salicylic acid
GO:0016036Biological Processcellular response to phosphate starvation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003824Molecular Functioncatalytic activity
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MNTTRTLAMS TTTKKEFGNS KEENELRRGP WTLEEDSLLI HYIARHGEGR WNMLAKSAGL  60
KRTGKSCRLR WLNYLKPDIK RGNLTPQEQL LILELHSKWG NRWSKIAQHL PGRTDNEIKN  120
YWRTRVQKQA RQLNIESGSK RFIDAVKCFW MPRLLQKMEQ NTSPSFDNSS SMTNMNNFGN  180
SIEASTSNSF NIPSMSPSSY PQRGFIDASN GNHLSTMSTS FNNPSLDFFQ FSQPLENSKS  240
APNVFENNFY NGPIQDNFCI DDTNNYGLEG LNLDPMSSME TYDFSQFDLQ TTESGWMLDN  300
MANTLWNMDS M*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A4e-26251301105MYB PROTO-ONCOGENE PROTEIN
1h8a_C5e-262512224120MYB TRANSFORMING PROTEIN
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00216DAPTransfer from AT1G68320Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g110460.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1540890.0AC154089.20 Medicago truncatula clone mth2-91j8, complete sequence.
GenBankAC1651350.0AC165135.29 Medicago truncatula clone mth2-20f2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003592641.20.0transcription factor MYB62
TrEMBLA0A396JYW10.0A0A396JYW1_MEDTR; Putative transcription factor MYB-HB-like family
TrEMBLG7ICA50.0G7ICA5_MEDTR; Myb transcription factor
STRINGAES628920.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16393494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68320.15e-87myb domain protein 62
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]