PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g106470.1 | ||||||||
Common Name | MTR_1g106470 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | bHLH | ||||||||
Protein Properties | Length: 288aa MW: 32125.8 Da PI: 4.9281 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 34.2 | 4.4e-11 | 211 | 252 | 9 | 55 |
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r+RR+riN+++ L++l+P+ +K++ +++Le+Av+Y+k Lq Medtr1g106470.1 211 ARKRRERINERLRILQTLVPNG-----TKVDISTMLEEAVQYVKFLQ 252 59******************97.....8******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.173 | 202 | 251 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.7E-14 | 204 | 269 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.6E-13 | 206 | 266 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.7E-11 | 208 | 257 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 6.22E-12 | 211 | 256 | No hit | No description |
Pfam | PF00010 | 2.1E-8 | 212 | 252 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 288 aa Download sequence Send to blast |
MEPAQLISEE WDSLSGQYTA EEADFMNQFL SGNKNTSFGM PSYFPHADFM CFSQGSSTTS 60 SGTYSCDLAT NFDSLSMFFC LEDAKFSPQY LDDSISKHIN NDIIDHKGSC LEPSSEEDRS 120 TNMENPAKRF RSSLEVSENT RNVRKCPKSA SMSNNEEGLM WNGTNNRFSH VDSIGGIISS 180 SLSPKEHEAP KLGRKSRAAS SPATDAQSIY ARKRRERINE RLRILQTLVP NGTKVDISTM 240 LEEAVQYVKF LQLQIKLLSS EDMWMYAPIA YNGMNIGLDL SFSSPTN* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.6842 | 0.0 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g106470.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003592481.1 | 0.0 | transcription factor bHLH84 | ||||
TrEMBL | G7IET1 | 0.0 | G7IET1_MEDTR; Putative transcription factor bHLH family | ||||
STRING | AES62732 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF807 | 33 | 121 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G14760.1 | 1e-36 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g106470.1 |
Entrez Gene | 11414108 |
Publications ? help Back to Top | |||
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