PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g106460.1
Common NameMTR_1g106460
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 331aa    MW: 36683.2 Da    PI: 5.1
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g106460.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.38.9e-112542941055
                      HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      ++RR+riN+++  L++l+P+      +K++ +++Le+Av+Y+k Lq
  Medtr1g106460.1 254 KKRRERINERLKILQSLVPNG-----TKVDISTMLEEAVQYVKFLQ 294
                      89*****************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.704244293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.2E-10250299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-13251310IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.58E-12253298No hitNo description
Gene3DG3DSA:4.10.280.108.4E-12253308IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.0E-8254294IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 331 aa     Download sequence    Send to blast
MDSGEQSCEE WSSLSGFYTA EEADFMGQLL NNFQVSEHHY GNFNLEIPST SWPGHESKIV  60
SMNSSSHFPQ NADNSNTDVF SFLQSSSISD TSNIFHNTNG GNICLNDHVA NIGYMNANIS  120
TYSVQGNDSQ QITENTSEEF GQDVSESAKE AIKNNLEKSG KRSRSSMKVQ KNKRNVKSRK  180
KPKSAFKSNA DEDESHDLQE QNLSSEDDDF NASQKLNAGT SSILNQNDSP DLKLKGKSRC  240
NGGSASDPQG VYAKKRRERI NERLKILQSL VPNGTKVDIS TMLEEAVQYV KFLQVQIKLL  300
SSDDHWMYAP IAYNGMNIGL NLNIIPTELP *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1253264KKRRERINERLK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g106460.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150431e-33AP015043.1 Vigna angularis var. angularis DNA, chromosome 10, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003592480.10.0transcription factor bHLH139
TrEMBLA0A396JZX20.0A0A396JZX2_MEDTR; Putative transcription factor bHLH family
TrEMBLG7IE610.0G7IE61_MEDTR; Basic helix loop helix (BHLH) DNA-binding family protein
STRINGAES627310.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.12e-51bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]