PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g100777.1
Common NameMTR_1g100777
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family HSF
Protein Properties Length: 304aa    MW: 33902.1 Da    PI: 7.46
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g100777.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.52.5e-34191092101
                      HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
     HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 
                      Fl+k+y+++++ +++++isw+++g+sf+v++++ fa+++LpkyFkh+nf+SFvRQLn+YgFkkv  ++         weF+++sF++g+++ll 
  Medtr1g100777.1  19 FLTKTYHLVDEIATDDVISWNDTGTSFIVWNPTIFARDLLPKYFKHNNFSSFVRQLNTYGFKKVVPDR---------WEFSNESFRRGEERLLG 103
                      9*****************************************************************99.........***************** PP

                      XXXXXX CS
     HSF_DNA-bind  96 kikrkk 101
                      +i+r+k
  Medtr1g100777.1 104 DIQRRK 109
                      ****97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.108.7E-3710102IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.0E-5515108IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467858.16E-3315108IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.8E-191942IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.7E-3019108IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-195769IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043405882IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-197082IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MAPSVEHNGE SQKSTPTPFL TKTYHLVDEI ATDDVISWND TGTSFIVWNP TIFARDLLPK  60
YFKHNNFSSF VRQLNTYGFK KVVPDRWEFS NESFRRGEER LLGDIQRRKI VSASLAAASN  120
AGVTATKTVP TAKPIASPSI SGEEQVISSN SSPSISTAAL LDENERLKKE NMQLAKEMED  180
MKSLYSNIFN LLSNYVNSQT EGGAEGKESC STASPVKTLR LLPEKRCNGE DAAVEDRNPK  240
LFGIAIDAKR EREGRCIEDD VVLSLNHSVH VDLKSEPFDS RKGEKRKMMR LNQCYRANQS  300
VCN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B4e-24910819129Heat shock factor protein 1
5d5v_B4e-24910819129Heat shock factor protein 1
5d5v_D4e-24910819129Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1280287RKGEKRKM
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.105910.0leaf| pod| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g100777.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1382831e-119BT138283.1 Medicago truncatula clone JCVI-FLMt-15E23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013469699.10.0heat stress transcription factor B-2b
TrEMBLA0A072VPK50.0A0A072VPK5_MEDTR; Heat shock transcription factor B2A
STRINGXP_004496590.11e-130(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20373482
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62020.11e-75heat shock transcription factor B2A
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]