PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g100777.1 | ||||||||
Common Name | MTR_1g100777 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | HSF | ||||||||
Protein Properties | Length: 304aa MW: 33902.1 Da PI: 7.46 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 109.5 | 2.5e-34 | 19 | 109 | 2 | 101 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95 Fl+k+y+++++ +++++isw+++g+sf+v++++ fa+++LpkyFkh+nf+SFvRQLn+YgFkkv ++ weF+++sF++g+++ll Medtr1g100777.1 19 FLTKTYHLVDEIATDDVISWNDTGTSFIVWNPTIFARDLLPKYFKHNNFSSFVRQLNTYGFKKVVPDR---------WEFSNESFRRGEERLLG 103 9*****************************************************************99.........***************** PP XXXXXX CS HSF_DNA-bind 96 kikrkk 101 +i+r+k Medtr1g100777.1 104 DIQRRK 109 ****97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 8.7E-37 | 10 | 102 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.0E-55 | 15 | 108 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 8.16E-33 | 15 | 108 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 1.8E-19 | 19 | 42 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.7E-30 | 19 | 108 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.8E-19 | 57 | 69 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 58 | 82 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.8E-19 | 70 | 82 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 304 aa Download sequence Send to blast |
MAPSVEHNGE SQKSTPTPFL TKTYHLVDEI ATDDVISWND TGTSFIVWNP TIFARDLLPK 60 YFKHNNFSSF VRQLNTYGFK KVVPDRWEFS NESFRRGEER LLGDIQRRKI VSASLAAASN 120 AGVTATKTVP TAKPIASPSI SGEEQVISSN SSPSISTAAL LDENERLKKE NMQLAKEMED 180 MKSLYSNIFN LLSNYVNSQT EGGAEGKESC STASPVKTLR LLPEKRCNGE DAAVEDRNPK 240 LFGIAIDAKR EREGRCIEDD VVLSLNHSVH VDLKSEPFDS RKGEKRKMMR LNQCYRANQS 300 VCN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5d5u_B | 4e-24 | 9 | 108 | 19 | 129 | Heat shock factor protein 1 |
5d5v_B | 4e-24 | 9 | 108 | 19 | 129 | Heat shock factor protein 1 |
5d5v_D | 4e-24 | 9 | 108 | 19 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 280 | 287 | RKGEKRKM |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.10591 | 0.0 | leaf| pod| root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g100777.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT138283 | 1e-119 | BT138283.1 Medicago truncatula clone JCVI-FLMt-15E23 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013469699.1 | 0.0 | heat stress transcription factor B-2b | ||||
TrEMBL | A0A072VPK5 | 0.0 | A0A072VPK5_MEDTR; Heat shock transcription factor B2A | ||||
STRING | XP_004496590.1 | 1e-130 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2037 | 34 | 82 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62020.1 | 1e-75 | heat shock transcription factor B2A |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g100777.1 |
Entrez Gene | 25485094 |
Publications ? help Back to Top | |||
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