PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g100653.1
Common NameMTR_1g100653
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MYB
Protein Properties Length: 296aa    MW: 33352.6 Da    PI: 7.5478
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g100653.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding63.83.3e-201461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEde lvd+++++G g+W+t +++ g+ R++k+c++rw +yl
  Medtr1g100653.1 14 RGAWTPEEDEALVDYITKHGHGSWRTLPKHAGLLRCGKSCRLRWINYL 61
                     89******************************99************97 PP
2Myb_DNA-binding54.72.3e-1767112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T eE+  +++++++lG++ W++Ia+ ++ gRt++++k++w+++l
  Medtr1g100653.1  67 RGSFTNEEETTIIQLHAMLGNR-WAAIAAQLP-GRTDNEIKNYWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.2E-25564IPR009057Homeodomain-like
PROSITE profilePS5129418.328961IPR017930Myb domain
SuperFamilySSF466898.44E-3111108IPR009057Homeodomain-like
SMARTSM007172.7E-141363IPR001005SANT/Myb domain
PfamPF002499.0E-171461IPR001005SANT/Myb domain
CDDcd001672.95E-111661No hitNo description
PROSITE profilePS5129426.0162116IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.4E-2765116IPR009057Homeodomain-like
SMARTSM007175.0E-1766114IPR001005SANT/Myb domain
PfamPF002491.2E-1667112IPR001005SANT/Myb domain
CDDcd001678.00E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MGKAPCCEKH GVKRGAWTPE EDEALVDYIT KHGHGSWRTL PKHAGLLRCG KSCRLRWINY  60
LRPGIKRGSF TNEEETTIIQ LHAMLGNRWA AIAAQLPGRT DNEIKNYWNT HLKKRVRQSL  120
GEKHPCLLPD RNVQSNSPST RHMVQWESAR VEAETRLSLE STLLNSGSTT KTYPDYFLQL  180
WHSDVGDKFR AGVVCQSIVS LEESCSDVSL QVKNNRTQSL KVSTPKLEDV NLIQEQNASS  240
YKLKLEDDIS GSDSGNYEFL DTSDSALKHL LRMPDEIGFL GHTDNFLNLL DGRCD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-29141167108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in cotyledon and hypocotyls of germinating seeds. {ECO:0000269|PubMed:19232308}.
UniprotTISSUE SPECIFICITY: Expressed in the shoot apex, young flower buds, developing carpels and siliques (PubMed:19232308). Expressed in floral meristem, initiating floral primordia and developing flowers (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may play a role in flower development by repressing ANT (PubMed:19232308). Regulates the transition of meristem identity from vegetative growth to flowering. Acts downstream of LFY and upstream of AP1. Directly activates AP1 to promote floral fate. Together with LFY and AP1 may constitute a regulatory network that contributes to an abrupt and robust meristem identity transition (PubMed:21750030). {ECO:0000269|PubMed:19232308, ECO:0000269|PubMed:21750030}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g100653.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0080336e-35AP008033.2 Lotus japonicus genomic DNA, chromosome 5, clone: LjT27I11, TM1382, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013469680.10.0transcription factor MYB41
SwissprotQ9M2D91e-88MYB17_ARATH; Transcription factor MYB17
TrEMBLA0A072VQK40.0A0A072VQK4_MEDTR; Myb transcription factor MIXTA-like protein
STRINGXP_004496577.11e-170(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23313280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61250.14e-91myb domain protein 17
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]