PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g099600.1
Common NameMTR_1g099600
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 313aa    MW: 34844.1 Da    PI: 6.5791
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g099600.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.63.5e-30185243259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers+++ +++++tY+g+Hnh 
  Medtr1g099600.1 185 TDLWAWRKYGQKPIKGSPYPRNYYRCSSSkGCTARKQVERSNTEADMFTVTYTGDHNHA 243
                      699************************998****************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.3E-29174245IPR003657WRKY domain
PROSITE profilePS5081131.8179245IPR003657WRKY domain
SuperFamilySSF1182902.75E-25179245IPR003657WRKY domain
SMARTSM007741.8E-35184244IPR003657WRKY domain
PfamPF031062.8E-25186242IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007263Biological Processnitric oxide mediated signal transduction
GO:0009739Biological Processresponse to gibberellin
GO:0042742Biological Processdefense response to bacterium
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MAEDWDLFAI VRSCQSATNT NTTENSFTTT NTIPSSISTS NFKVELEYDA FSFPNVVQPI  60
TNELQGLNQL LTSFTPTITT TTSGHGINPN SPPHIARYIG QQQNHFVPTT SSSIWPPHFV  120
QETSTSSFNK FHNQQLQQQH NQLQAIQKQE FQVPQSIQSQ TPRSRKRKSQ QGKMVCHVTA  180
DNLSTDLWAW RKYGQKPIKG SPYPRNYYRC SSSKGCTARK QVERSNTEAD MFTVTYTGDH  240
NHARPTHRNS LAGSTRTKSP VTHPTTSISG QPNSSISSCS SLAPNSFAEE EEDIDMEIET  300
DDDGEDSCDI PS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-201862461880Disease resistance protein RRS1
5w3x_D2e-201862461880Disease resistance protein RRS1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1163168SRKRKS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00561DAPTransfer from AT5G52830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g099600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1486550.0AC148655.4 Medicago truncatula clone mth2-61c11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003592183.20.0probable WRKY transcription factor 27
TrEMBLG7IDY10.0G7IDY1_MEDTR; WRKY family transcription factor
STRINGAES624340.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67943249
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.11e-53WRKY DNA-binding protein 27
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]