PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g098920.1
Common NameMTR_1g098920
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family Trihelix
Protein Properties Length: 451aa    MW: 51386.2 Da    PI: 6.6007
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g098920.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix766.2e-24125220183
         trihelix   1 rWtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpy 81 
                      +Wt+++v+++i+a+++++e+  ++             +kk++W+ vsk+m+erg+++sp+qC++k+++lnkrykk++++ +++ ++e++++ ++
  Medtr1g098920.1 125 KWTDNMVRLMITAVSYIGEDRTSDGvggsgrrkfavlQKKGKWRCVSKVMAERGCHVSPQQCEDKFNDLNKRYKKLNDMLGRGtSCEVVENPAL 218
                      7***************999999865566677888899**********************************************55888888777 PP

         trihelix  82 fd 83 
                      +d
  Medtr1g098920.1 219 LD 220
                      65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.0E-22123249No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MDVNLSQGGM IQGGVGGNSF GGFDLPGSIQ VHHQAHHPHT IHQHQANPHQ GLSLHSSVQD  60
GFPLTMGPLQ NCDQSMSMTD YGKGERGKIC TSEEDEPSFM EDGFDGQHEG GRGKKGSSSP  120
WQRVKWTDNM VRLMITAVSY IGEDRTSDGV GGSGRRKFAV LQKKGKWRCV SKVMAERGCH  180
VSPQQCEDKF NDLNKRYKKL NDMLGRGTSC EVVENPALLD GIYYLSEKEK DEVRKILSSK  240
QLFYEEMCSY HNCNRLHLPH DPALQSSMQL ALRNRDDHDN DDIRRSQLDD HDEDEQDAET  300
DEHDAFKDNC ASRGEGRLNG SMKKLKQNQG QNHANAFGNS FNCQDYFNKG SYPRGQMGQS  360
DGNQVIPENM RAAWLQKQWV DSRQVQLEEQ KLQIQAEKLE LEKQRFKWQR FSKQKDRELE  420
KLSLENERMK LENERMALEL KQKEMSLGFN *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.179720.0leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g098920.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1579850.0AC157985.16 Medicago truncatula clone mth2-150l20, complete sequence.
GenBankAC2255460.0AC225546.4 Medicago truncatula clone mth2-78i17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003592116.10.0uncharacterized protein LOC11407017
TrEMBLG7ICZ30.0G7ICZ3_MEDTR; Transcription factor
STRINGAES623670.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50013157
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-144sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]