PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g098900.1
Common NameMTR_1g098900
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family Trihelix
Protein Properties Length: 638aa    MW: 70838.1 Da    PI: 5.823
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g098900.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix93.32.4e-2957141187
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                      rW++qe+laL+++r++m++ +r+++ k+plW+evs+k++e g++rs+k+Ckek+en+ k++k++k+g+++++  + +t+++fdqlea
  Medtr1g098900.1  57 RWPRQETLALLRIRSDMDTVFRDASVKGPLWDEVSRKLAELGYHRSSKKCKEKFENVYKYHKRTKDGRGGKS--DGKTYRFFDQLEA 141
                      8********************************************************************964..5557*******85 PP
2trihelix1062.6e-33454539187
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                      rW+k ev+aLi++r++m+++++++  k+plWee+s +m+  g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+ql+a
  Medtr1g098900.1 454 RWPKVEVQALINLRTSMDNKYQENGPKGPLWEEISLAMKNLGYNRNAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQLDA 539
                      8*********************************************************************8.99***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.01854116IPR001005SANT/Myb domain
PROSITE profilePS500906.92256114IPR017877Myb-like domain
CDDcd122031.88E-2356121No hitNo description
PfamPF138379.6E-1956142No hitNo description
PROSITE profilePS500906.946447511IPR017877Myb-like domain
SMARTSM007170.0022451513IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.8E-4452510IPR009057Homeodomain-like
CDDcd122034.78E-29453518No hitNo description
PfamPF138371.6E-22453540No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 638 aa     Download sequence    Send to blast
MLGDSAVLSG GGGDAPAPAA APPNMTVEGG GGVGSNSESD VERGRVEDGE RSFGGNRWPR  60
QETLALLRIR SDMDTVFRDA SVKGPLWDEV SRKLAELGYH RSSKKCKEKF ENVYKYHKRT  120
KDGRGGKSDG KTYRFFDQLE ALDHFHTNPS PQNISKPPQI SAPTPSQVVT TATVSLPITE  180
STMSQVVNTT LSIPHATVPS ISMPQNNIAT TQPIMNMNPT IPSNPSTIFQ PSTTNPTSTN  240
PLPSFPNIST DLLSNSMASS YSTSSEDTTE EGSRKRKRKW KNFFERIMKK VTEKQEDLQK  300
RFLEVIEKRE QERVVREEAW RAQEMQRINR EREMLAHERS ITAAKDAAVM SFLQKIAEQQ  360
NLGQALHNIN IAQPPPPQQQ LPQRSVAPTP TPAVVPISVV QVNTTPPPAQ PPPVSKLGTT  420
IVQQQQQQQL VTNMEIVKVD NNGETFMGGM SSSRWPKVEV QALINLRTSM DNKYQENGPK  480
GPLWEEISLA MKNLGYNRNA KRCKEKWENI NKYFKKVKES NKKRPEDSKT CPYFHQLDAL  540
YKEKGKGENY SGGGGGGAGS TQVVQPENMA APLMVQPEQQ WRPPQQGEDN MEQNRGQEEE  600
DMDEDDKDGE EEDDEEDMDE SGNFEVVANK PAVGASA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1273278RKRKRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00244DAPTransfer from AT1G76890Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g098900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2255460.0AC225546.4 Medicago truncatula clone mth2-78i17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003592114.10.0trihelix transcription factor GT-2
TrEMBLG7ICZ10.0G7ICZ1_MEDTR; Putative transcription factor MYB family
STRINGAES623650.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.13e-66Trihelix family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]