PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g098870.1
Common NameMTR_1g098870
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family Trihelix
Protein Properties Length: 566aa    MW: 64378.6 Da    PI: 6.0482
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g098870.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix94.21.3e-2955138186
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      rW++qe+laL+++r++m+  +r+++lk+plWeevs+k+++ g++rs+k+Ckek+en+ k++k++keg++++++++  t+++fdql+
  Medtr1g098870.1  55 RWPRQETLALLKIRSDMDGVFRDSSLKGPLWEEVSRKLADLGYHRSSKKCKEKFENVYKYHKRTKEGRSGKSEGK--TYRFFDQLQ 138
                      8********************************************************************975544..6******98 PP
2trihelix103.91.2e-32372457187
         trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 
                      rW+k+ev+aLi++r+++e +++++  k+plWe++s++m+++g++r++k+Ckekwen+nk+ykk+ke++k+r  ++s+tcpyf++lea
  Medtr1g098870.1 372 RWPKSEVHALIRIRTSLEPKYQENGPKAPLWEDISAAMKRQGYNRNAKRCKEKWENINKYYKKMKESNKQR-RDDSKTCPYFNELEA 457
                      8*********************************************************************8.78899*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.03152114IPR001005SANT/Myb domain
PROSITE profilePS500906.9854112IPR017877Myb-like domain
PfamPF138373.8E-1954140No hitNo description
CDDcd122033.90E-2255119No hitNo description
PROSITE profilePS500906.969365429IPR017877Myb-like domain
SMARTSM007170.63369431IPR001005SANT/Myb domain
CDDcd122034.20E-26371436No hitNo description
PfamPF138377.6E-23372458No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 566 aa     Download sequence    Send to blast
MQLGDATVMM ETCSGENIVP VTAQNGGGRE EKGREVGGEE DDKMNINING GGGNRWPRQE  60
TLALLKIRSD MDGVFRDSSL KGPLWEEVSR KLADLGYHRS SKKCKEKFEN VYKYHKRTKE  120
GRSGKSEGKT YRFFDQLQAL EKQLTFSSYH PKPQTNNNTP TTNPIETTQA ISYVTTTVPS  180
TNPTTFISPS PQPNNNNVPN SLPNMNNLFS TATTSTSSST ASDEDLEEKY RKKRKWKDYF  240
RRLTRQVLAK QEEMQKKFLE AIDKREKEHI AQQDALRIQE MERISKEHEL LIQERSSAAQ  300
KNAAVIAFLQ KLSGQPPPQP PLAPELSVCQ TALASQVQTQ QLVIPNNNIV EFQNMNNGYK  360
SGNGGASPSP SRWPKSEVHA LIRIRTSLEP KYQENGPKAP LWEDISAAMK RQGYNRNAKR  420
CKEKWENINK YYKKMKESNK QRRDDSKTCP YFNELEAIYK EKNKTQNLFG SNSFHSMKSN  480
ETMEPLMVQP EQQWRPPTTF EEGDVVKKNV DEAKEEDDNG DVDDDEDENM DEYEDGDSME  540
EDEGGVSSRY EVVTTNKLSS MDTIV*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.78760.0leaf| root| stem
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specific DNA sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g098870.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1495340.0BT149534.1 Medicago truncatula clone JCVI-FLMt-19J11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003592112.10.0trihelix transcription factor GT-2
SwissprotQ391171e-138TGT2_ARATH; Trihelix transcription factor GT-2
TrEMBLG7ICY90.0G7ICY9_MEDTR; Myb/SANT-like DNA-binding domain protein
STRINGAES623630.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.21e-74Trihelix family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]