PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr1g094045.1

Common Name

MTR_1g094045

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

Trihelix

Protein Properties

Length: 382aa MW: 42978.7 Da PI: 9.3689

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr1g094045.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	45.9	1.5e-14	56	162	2	72
trihelix 2 WtkqevlaLiearr.emeerlrrgk...................................lkkplWeevskkmrergferspkqCkekwenlnk 59 Wt qe+l Li+a++ ++e+rlr+++ + + +W++v ++++++g+ rs++qC++kw+nl + Medtr1g094045.1 56 WTIQETLILITAKKlDDERRLRNTStststpssssqdpnrtpntthvtsiaspststsrsSGELRWKWVENYCWSHGCLRSQNQCNDKWDNLLR 149 ***********9534444444335677788888889999999999999999999999899**************************** PP trihelix 60 rykkikegekkrt 72 +ykk+++ e+k + Medtr1g094045.1 150 DYKKVRDYESKSE 162 *******9953 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	4.4E-5	52	67	IPR009057	Homeodomain-like
Pfam	PF13837	2.3E-9	55	165	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.4E-5	113	149	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence Send to blast
MSDPSTSTTP LPHPSILTDQ HNLPLIHSIT TAQPPPPQPQ PPSSSSSSRE YRKGNWTIQE 60 TLILITAKKL DDERRLRNTS TSTSTPSSSS QDPNRTPNTT HVTSIASPST STSRSSGELR 120 WKWVENYCWS HGCLRSQNQC NDKWDNLLRD YKKVRDYESK SESSPPNNNS NKDHFPSYWI 180 LNKQQRKEQN LPSNMVFEVY QAISEVLQRK QSQRNNPTPL QQHQQQGLVT LASSPLPALP 240 LQTQFLPPPP PPPLPPPLPL QQPPPPPHAP AVSERTESSD SEKSEDNDED DGGSESKRRK 300 VKNLGSSIMR SASVLARALR RCEEKKEKRH RELIELEQRR IQMEESRNEV HRQGIATLVA 360 AVSNLSGAIH SFINSEHHGQ R*

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence Send to blast

MSDPSTSTTP LPHPSILTDQ HNLPLIHSIT TAQPPPPQPQ PPSSSSSSRE YRKGNWTIQE  60
TLILITAKKL DDERRLRNTS TSTSTPSSSS QDPNRTPNTT HVTSIASPST STSRSSGELR  120
WKWVENYCWS HGCLRSQNQC NDKWDNLLRD YKKVRDYESK SESSPPNNNS NKDHFPSYWI  180
LNKQQRKEQN LPSNMVFEVY QAISEVLQRK QSQRNNPTPL QQHQQQGLVT LASSPLPALP  240
LQTQFLPPPP PPPLPPPLPL QQPPPPPHAP AVSERTESSD SEKSEDNDED DGGSESKRRK  300
VKNLGSSIMR SASVLARALR RCEEKKEKRH RELIELEQRR IQMEESRNEV HRQGIATLVA  360
AVSNLSGAIH SFINSEHHGQ R*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr1g094045.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013469425.1	0.0	trihelix transcription factor ASR3
TrEMBL	A0A072VPY8	0.0	A0A072VPY8_MEDTR; Myb/SANT-like DNA-binding domain protein
STRING	XP_004496217.1	1e-164	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6804	32	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	2e-40	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Medtr1g094045.1
Entrez Gene	25484907

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132]