PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g090723.2
Common NameMTR_1g090723
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NAC
Protein Properties Length: 630aa    MW: 69884.3 Da    PI: 4.1509
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g090723.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.72.4e-49101363128
              NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      pGfrFhPtdee+v +yLkkk++g+  ++++ ++ +diyk+ePwdLpk  k+k+++ ewyfF+  dkky ++ r+nrat++gyWk+tgkd+++++
  Medtr1g090723.2  10 PGFRFHPTDEEIVRYYLKKKLTGNLPSCFDYLAVIDIYKFEPWDLPKlsKLKTRDLEWYFFTALDKKYGNSIRTNRATDRGYWKTTGKDRAIKN 103
                      8*********************************************5457888888*************************************9 PP

              NAM  95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128
                       ++e+vg+kktLv+++grap+g +++Wvmheyr+
  Medtr1g090723.2 104 -GEETVGMKKTLVYHSGRAPHGDRSNWVMHEYRM 136
                      .99*****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019418.24E-567158IPR003441NAC domain
PROSITE profilePS5100554.8858158IPR003441NAC domain
PfamPF023651.1E-2610136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009644Biological Processresponse to high light intensity
GO:0009962Biological Processregulation of flavonoid biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 630 aa     Download sequence    Send to blast
MEETAFYQGP GFRFHPTDEE IVRYYLKKKL TGNLPSCFDY LAVIDIYKFE PWDLPKLSKL  60
KTRDLEWYFF TALDKKYGNS IRTNRATDRG YWKTTGKDRA IKNGEETVGM KKTLVYHSGR  120
APHGDRSNWV MHEYRMIDET LAKAGVQDAY VLCRIFEKSG SGPKNGEKYG APFVEEEWES  180
FGEQVLPLPP VDNEPLKLEG FTPDVDELVN PLAVSVPDDV LVDPLDVFYD ELWNENLPDS  240
TYEDFFEAHD LDQDLVTSNT VGSAELQSNF CYGECSTHPQ YSQAFINERK QSEATLGVYE  300
YEVDQPNNIA DLYGGNINSV QDGYNGGTNH NENPLNFNFA SEVDQPNNIA DLYGGNINSV  360
QDGYNGGTNH NENPLNFNFA SEDLGQVFHA PDYITGVTDE YMETNDIAEM DPSVAAMLDG  420
SLADPDDDIS NYICFDSPLN ARSESPIASY GQPIIEQNVE GETYDSSLTN KHVFEAQPSD  480
EVLPKEDLAA SNWVSGDANT FVKHLLANIP APPAFASEFP AKELACEIHP AAESSNSAHI  540
TAGMISITDI TFRGNAMDWM VGKNGGFNTV MSTGFSQTDV NPATLVPISG LVCSKTAFML  600
SHGWVFLMGF SVVILSLSFK IGSFMYTGK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A5e-411016422174NAC domain-containing protein 19
3swm_B5e-411016422174NAC domain-containing protein 19
3swm_C5e-411016422174NAC domain-containing protein 19
3swm_D5e-411016422174NAC domain-containing protein 19
3swp_A5e-411016422174NAC domain-containing protein 19
3swp_B5e-411016422174NAC domain-containing protein 19
3swp_C5e-411016422174NAC domain-containing protein 19
3swp_D5e-411016422174NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in root meristem (Ref.1). Expressed in roots, rosette leaves, cauline leaves, shoot apex, stems and flowers (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcripition activator associated with the induction of genes related to flavonoid biosynthesis and required for the accumulation of anthocyanins in response to high light stress (PubMed:19887540). Plays a role in the regulation of 20S and 26S proteasomes in response to high light stress (PubMed:21889048). {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:19887540, ECO:0000269|PubMed:21889048}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00059PBMTransfer from AT5G04410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g090723.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By exposure to high light (PubMed:19887540). Induced by heat and methyl methanesulfonate (MMS) treatment (PubMed:17158162). {ECO:0000269|PubMed:17158162, ECO:0000269|PubMed:19887540}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1445910.0BT144591.1 Medicago truncatula clone JCVI-FLMt-18E7 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013469279.10.0NAC domain-containing protein 53 isoform X1
SwissprotQ84K009e-87NAC78_ARATH; NAC domain-containing protein 78
TrEMBLA0A072VNB40.0A0A072VNB4_MEDTR; NAC transcription factor-like protein
STRINGXP_004496133.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04410.14e-89NAC domain containing protein 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]
  5. Xiao D, et al.
    SENESCENCE-SUPPRESSED PROTEIN PHOSPHATASE Directly Interacts with the Cytoplasmic Domain of SENESCENCE-ASSOCIATED RECEPTOR-LIKE KINASE and Negatively Regulates Leaf Senescence in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1275-91
    [PMID:26304848]
  6. Gladman NP,Marshall RS,Lee KH,Vierstra RD
    The Proteasome Stress Regulon Is Controlled by a Pair of NAC Transcription Factors in Arabidopsis.
    Plant Cell, 2016. 28(6): p. 1279-96
    [PMID:27194708]
  7. Tang Y,Zhao CY,Tan ST,Xue HW
    Arabidopsis Type II Phosphatidylinositol 4-Kinase PI4Kγ5 Regulates Auxin Biosynthesis and Leaf Margin Development through Interacting with Membrane-Bound Transcription Factor ANAC078.
    PLoS Genet., 2016. 12(8): p. e1006252
    [PMID:27529511]