PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g086970.1
Common NameMTR_1g086970
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GRAS
Protein Properties Length: 481aa    MW: 54823.4 Da    PI: 7.2479
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g086970.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS240.47.7e-741054783374
             GRAS   3 elLlecAeavssgdlelaqalLarlsel..aspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalkl.......fse 86 
                      + +l++Ae v  +++e+a+ lL++ + +  + + g+++qRl ++f +AL++r++r ++ + +k  +++e ++  ++e +  ++l        ++
  Medtr1g086970.1 105 QFVLAAAERVGCQQFERANMLLSHFHLMneSGNIGSTVQRLLFHFSQALQERINReTGRGKMKLHRSNERNK--ETELIDKMELdtnivvkCHQ 196
                      67899*******************999964556679*******************44444444444444443..44444444334446677889 PP

             GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfefn 179
                        P+ ++ +++  qaI+e v++++++H i ++i+ G+   +++qaL +R+e+p   l+iT++g    ++k +lee+g+ L +fAe+l++pf +n
  Medtr1g086970.1 197 KIPFNQVMQFAGVQAIVEHVASQTKIHLIHLNIGCGVMSTCFMQALVDRKEKPVeILKITAIGF---SNKAKLEEIGKSLMSFAESLNIPFLYN 287
                      99***********************************************9766559********...579************************ PP

             GRAS 180 vlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdslea 273
                      ++ +++  +++l++++++ +Ea+a+ +  +l +++++s  le+    ++k++++++P +++v e ea+hns+ F++rf+eal +ysa+fd++++
  Medtr1g086970.1 288 IVFVEDAMEIKLDQFDIEYDEAVAIYSPCSLRTMVSNSDGLEN----LMKVIRKMKPFIMIVLELEANHNSPLFANRFVEALFFYSAFFDCVDT 377
                      ***********************************88888888....*********************************************** PP

             GRAS 274 klpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrp 366
                       + ++ e r+++E+  l++ i+n+v  e +er+ r+ +   Wr+ + +  + +  +se+   qa+l+ +k++ ++  +++++ ++l++gWk+ p
  Medtr1g086970.1 378 CIKEDYECRVMMEAI-LSEGIRNIVGLEDEERKVRNVKIDVWRRFFARYRMVETGFSESSIYQANLVTKKFDcGKFCTIDKNGKCLIIGWKGTP 470
                      *************99.********************************************************99989***************** PP

             GRAS 367 LvsvSaWr 374
                      + s+SaW+
  Medtr1g086970.1 471 IHSISAWK 478
                      *******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098533.29277457IPR005202Transcription factor GRAS
PfamPF035142.7E-71105478IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MEQENQAIIS IPTLKQVQKP PPSSLASLEL LKNYGSKFNK QKNKSNVETC ASPQKLSTED  60
IITLAGTKYI QNSSQWHDNN LYIPYGTVLG SLLSEEENKQ VELAQFVLAA AERVGCQQFE  120
RANMLLSHFH LMNESGNIGS TVQRLLFHFS QALQERINRE TGRGKMKLHR SNERNKETEL  180
IDKMELDTNI VVKCHQKIPF NQVMQFAGVQ AIVEHVASQT KIHLIHLNIG CGVMSTCFMQ  240
ALVDRKEKPV EILKITAIGF SNKAKLEEIG KSLMSFAESL NIPFLYNIVF VEDAMEIKLD  300
QFDIEYDEAV AIYSPCSLRT MVSNSDGLEN LMKVIRKMKP FIMIVLELEA NHNSPLFANR  360
FVEALFFYSA FFDCVDTCIK EDYECRVMME AILSEGIRNI VGLEDEERKV RNVKIDVWRR  420
FFARYRMVET GFSESSIYQA NLVTKKFDCG KFCTIDKNGK CLIIGWKGTP IHSISAWKFL  480
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-2911147727378Protein SCARECROW
5b3h_A2e-2911147726377Protein SCARECROW
5b3h_D2e-2911147726377Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g086970.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1519560.0AC151956.5 Medicago truncatula clone mth2-52p17, complete sequence.
GenBankAC1600970.0AC160097.28 Medicago truncatula clone mth2-182a12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003591395.10.0DELLA protein RGL1
TrEMBLA0A396K3R10.0A0A396K3R1_MEDTR; Putative transcription factor GRAS family
TrEMBLG7ICX50.0G7ICX5_MEDTR; GRAS family transcription factor
STRINGAES616460.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47933162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.12e-44RGA-like 1
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]