PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr1g084950.1
Common NameMTR_1g084950
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family M-type_MADS
Protein Properties Length: 157aa    MW: 18056.1 Da    PI: 10.2118
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr1g084950.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF44.61.9e-141048240
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviif 40
                     +i+++s r+ t+ kR++gi+KK +EL +LC++ ++ ii 
  Medtr1g084950.1 10 FISDDSARKATYKKRKKGIIKKVSELTILCGIPACAIIS 48
                     89*********************************9996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.4E-19160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.544147IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-21182IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-7323IPR002100Transcription factor, MADS-box
PfamPF003191.7E-141050IPR002100Transcription factor, MADS-box
PRINTSPR004044.1E-72338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 157 aa     Download sequence    Send to blast
MTRKKVKLAF ISDDSARKAT YKKRKKGIIK KVSELTILCG IPACAIISNP FDSKIEVWPN  60
LEEAKHVIER YQNSSVKDET KNVNQESFLL QRISKAREHL QKQKHDNREK ELNILMIGYM  120
KNKKLPDGLT VSDLKEFDKL IEKNMKEIDN KIDALG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVKLAFISDDSARKATYKKRK
22125KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr1g084950.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2328690.0AC232869.5 Medicago truncatula clone mth2-13n12, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003591253.11e-110agamous-like MADS-box protein AGL80
TrEMBLG7IAC31e-109G7IAC3_MEDTR; MADS-box transcription factor family protein
STRINGAES615041e-110(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13237929
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26630.14e-32M-type_MADS family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]