PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Medtr1g080330.2 | ||||||||
Common Name | MTR_1g080330 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
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Family | G2-like | ||||||||
Protein Properties | Length: 287aa MW: 32140.8 Da PI: 4.6264 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 110 | 1.2e-34 | 175 | 229 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr+rWtpeLHe+Fveav+qLGGsekAtPk +l+lmkv+gLt++hvkSHLQkYR+ Medtr1g080330.2 175 KPRMRWTPELHEAFVEAVNQLGGSEKATPKGVLNLMKVEGLTIYHVKSHLQKYRT 229 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.5E-33 | 172 | 231 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.597 | 172 | 232 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.94E-18 | 173 | 229 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.8E-25 | 175 | 229 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 4.4E-10 | 177 | 228 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 9.9E-10 | 262 | 282 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MSSSIPSSSM QAASINSNIR SVGHMFSTPS EQPDNVHFSS ASEIHSMTFP QESDVMSWGT 60 DPFEDILQFH DNVPTQNDHV EYNGSEVLGG NAKTTDFKEW VDQLMSVDDD SIQPNWNELL 120 GDNNMAEPKS QDAQMSPSLL MQETQVSQQQ YIPSLPSKEV NDLPNSSVST TSQSKPRMRW 180 TPELHEAFVE AVNQLGGSEK ATPKGVLNLM KVEGLTIYHV KSHLQKYRTA RYKPESSEGI 240 PEKKLTSIDE MPSIDLKTPK GITEALRLQM ELQKRLHEQL EVYLSW* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 1e-32 | 175 | 233 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 1e-32 | 175 | 233 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 1e-32 | 175 | 233 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 1e-32 | 175 | 233 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 1e-32 | 175 | 233 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 1e-32 | 175 | 233 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 1e-32 | 175 | 233 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 1e-32 | 175 | 233 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Mtr.12697 | 0.0 | leaf| root| stem |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in shoots and roots. {ECO:0000269|PubMed:20838596}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor acting as central integrator of phosphate starvation responses (PubMed:20838596). Regulates FER1 expression upon phosphate starvation, linking iron and phosphate homeostasis (PubMed:23788639). {ECO:0000269|PubMed:20838596, ECO:0000269|PubMed:23788639}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Medtr1g080330.2 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not up-regulated by Pi starvation. {ECO:0000269|PubMed:26586833}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC135461 | 0.0 | AC135461.11 Medicago truncatula clone mth2-34f24, complete sequence. | |||
GenBank | AC137701 | 0.0 | AC137701.27 Medicago truncatula clone mth2-35h1, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003590977.1 | 0.0 | protein PHR1-LIKE 1 | ||||
Swissprot | Q8GUN5 | 2e-68 | PHL1_ARATH; Protein PHR1-LIKE 1 | ||||
TrEMBL | A0A072VLW7 | 0.0 | A0A072VLW7_MEDTR; Myb-like transcription factor family protein | ||||
STRING | AES61228 | 0.0 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G29000.3 | 6e-71 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Medtr1g080330.2 |
Entrez Gene | 11411041 |
Publications ? help Back to Top | |||
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